Job Description P25519 Confidence 99.56% Date Thu Jan 5 11:41:54 GMT 2012 Rank 173 Aligned Residues 165 % Identity 23% Template c3agqA_ PDB info PDB header:translation,transferase Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q PDBTitle: structure of viral polymerase form ii Resolution 3.22 Å

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		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	A	D	V	P	T	V	S	L	V	G	Y	T	N	A	G	K	S	T	L	F	N	R	I	T	E	A	R	V	Y	A	A	D	Q	L	F	A	T	L	D	P	T	L	R	R	I	D	V	A	D	V	G	E	T	V	L	A	D	T	V	G	F	I	R	H	L	P	H	D	L	V	A	A	F	K	A	T	L	Q
Query Conservation
Alig confidence																														.	.	.																.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation																														.	.	.																.	.	.	.														.	.	.	.	.	.	.	.
Template Sequence		R	T	K	P	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	I	T	T	V	.	.	.	L	A	K	T	Y	G	G	T	S	H	V	E	Y	D	T	.	.	.	.	P	T	R	H	Y	A	H	V	D	C	P	G	H	.	.	.	.	.	.	.	.	A	D	Y	V	K	N	M	I	T
Template Known Secondary structure				S											T	T	S	S												.	.	.	T	T	T	T	S											.	.	.	.	S	S												.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.																.	.	.	.														.	.	.	.	.	.	.	.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.				320	.	.	.	.	.	.	.	.	.	330	.	.	.	.					.	.	.	.	.	340	.	.	.	.	.	.	.									.	.	350	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.													.	.	.	.	.	.	.
Predicted Secondary structure																																									.																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	T	R	Q	A	T	L	L	L	H	V	I	D	A	A	D	V	R	V	Q	E	N	I	E	A	V	N	T	V	L	E	E	I	D	A	H	E	I	P	.	T	L	L	V	M	N	K	I	D	M	L	E	D	F	E	P	R	I	D	R	D	.	.	.	.	.	.	.	.	.	.	.	.	E	E	N	K	P	N	R
Query Conservation																																									.																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.																.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.
Template Sequence		G	A	A	Q	M	D	G	A	I	L	V	V	A	A	T	D	G	P	M	P	.	.	.	.	Q	T	R	E	H	I	L	L	G	R	Q	V	G	V	P	Y	I	I	V	F	L	N	K	C	D	M	V	D	D	E	E	L	L	E	L	V	E	M	E	V	R	E	L	L	S	Q	Y	D	F	P	G	D	D	T	P	I
Template Known Secondary structure		T	S				S								T	T	T		S		G	.	.	.	.	G	G										T	T		S										T	T		S		T	T	T												T	G	G	G	T	S		T	T	T
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.					.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		340	.	.	.	.	.	.	.									.	.	350	.	.	.	.	.	.	.	.	.	360	.	.			.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.																.	.
Query SS confidence										.	.	.	.	.	.	.	.																.	.
Query Sequence		V	W	L	S	A	Q	T	G	.	.	.	.	.	.	.	.	A	G	I	P	Q	L	F	Q	A	L	T	E	R	L	S	.	.	G	E	V	A	Q	H	T	L	R	L	P	P	Q	E
Query Conservation										.	.	.	.	.	.	.	.																.	.
Alig confidence										.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		V	R	G	S	A	L	K	A	L	E	G	D	A	E	W	E	A	K	I	L	E	L	A	G	F	L	D	S	Y	I	P	E	P	E	R	A	I	D	K	P	F	L	L	P	I	E	D
Template Known Secondary structure						T	T	T	T	T	T	T																		T	S						G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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