Job Description P25519 Confidence 98.81% Date Thu Jan 5 11:41:54 GMT 2012 Rank 266 Aligned Residues 140 % Identity 20% Template c2j7pA_ PDB info PDB header:signal recognition Chain: A: PDB Molecule:signal recognition particle protein; PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy Resolution 1.97 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.							.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.																			.	.	.	.	.	240	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	V	S	L	V	G	Y	T	N	A	G	K	S	T	L	F	N	R	I	T	.	.	.	.	.	.	E	A	R	V	Y	A	A	D	Q	L	F	A	T	L	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	R	R	I	D	V	A	D	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																						.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.						.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.
Template Sequence		L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	.	.	.	.	.	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E
Template Known Secondary structure								S	T	T	S	S														T	T	T					.	.	.	.	.							S	S	T	T													T								T	T
Template Predicted Secondary structure																																	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130						.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
							244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	V	G	E	T	V	L	A	D	T	V	G	F	I	R	H	L	P	H	D	L	V	A	A	F	K	A	T	L	Q	E	T	R	Q	A	T	L	L	L	H	V	I	D	A	A	D	V	R	V	Q	E	N	I	E	A	V	N	T	V	L	E	E	I	D	A	H	E	I	P	T	L	L	V	M	N	K
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.												.																					.															.	.																	.	.	.	.
Template Conservation																		.																					.															.	.																	.	.	.	.
Template Sequence		K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	.	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	.	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	.	.	E	A	L	S	V	A	R	A	F	D	E	K	V	G	V	T	.	.	.	.	G	L	V	L	T	K
Template Known Secondary structure						T	T											.			T	T																	.		S								T	T			T	.	.	T												T				.	.	.	.
Template Predicted Secondary structure																		.																					.															.	.																	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240					.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	M	L	E	D	F	E	P	R	I	D	R	D	E	E	N	K	P	N	R	V	W	L	S	A	Q	T	G	A	G	I	P	Q	L
Query Conservation
Alig confidence																											.	.
Template Conservation																											.	.
Template Sequence		L	D	G	D	A	R	G	G	A	A	L	S	A	R	H	V	T	G	K	P	I	Y	F	A	G	.	.	V	S	E	K	P	E	G	L
Template Known Secondary structure		T	T	S					T																		.	.		S	S	S	T	T
Template Predicted Secondary structure																											.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions