Job Description P25519 Confidence 99.29% Date Thu Jan 5 11:41:54 GMT 2012 Rank 244 Aligned Residues 145 % Identity 17% Template c2hupB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:ras-related protein rab-43; PDBTitle: crystal structure of human rab43 in complex with gdp Resolution 2.05 Å

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		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	T	V	S	L	V	G	Y	T	N	A	G	K	S	T	L	F	N	R	I	T	E	A	R	V	Y	A	A	D	Q	L	F	A	T	L	D	P	T	L	R	R	I	D	V	A	D	V	G	E	T	V	L	A	D	T	V	G	F	I	R	H	L	P	H	D	L	V	A	A	F	K	A	T	L	Q	E	T	R	Q
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Template Sequence		L	F	K	L	V	L	V	G	D	A	S	V	G	K	T	C	V	V	Q	R	F	K	T	G	A	F	.	.	.	.	.	.	.	.	.	.	.	.	D	F	T	M	K	T	L	E	I	R	V	K	L	Q	I	W	D	T	A	G	Q	.	.	.	.	.	.	.	.	E	R	F	R	T	I	T	Q	S	Y	Y	R	S
Template Known Secondary structure											T	T	S	S											S			.	.	.	.	.	.	.	.	.	.	.	.																			T	T		.	.	.	.	.	.	.	.	G	G	G									T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.													.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.									.	.	.	.	.	70	.	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.						.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																																															.	.	.	.	.
Query SS confidence																																															.	.	.	.	.
Query Sequence		A	T	L	L	L	H	V	I	D	A	A	D	V	R	V	Q	E	N	I	E	A	V	N	T	V	L	E	E	I	D	A	H	E	I	P	T	L	L	V	M	N	K	I	D	M	.	.	.	.	.	L	E	D	F	E	P	R	I	D	R	D	E	E	N	K	P	N	R	V	W	L	S	A	Q	T	G	A	G	I	P
Query Conservation																																															.	.	.	.	.
Alig confidence																																															.	.	.	.	.
Template Conservation
Template Sequence		A	N	G	A	I	L	A	Y	D	I	T	K	R	S	S	F	L	S	V	P	H	W	I	E	D	V	R	K	Y	A	G	S	N	I	V	Q	L	L	I	G	N	K	S	D	L	S	E	L	R	E	V	S	L	A	E	A	Q	S	L	A	E	H	Y	D	I	L	C	A	I	E	T	S	A	K	D	S	S	N	V	E
Template Known Secondary structure			S								T	T																			S		S											G	G	G	G	G	G			S												T	T		S							T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		352	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	F	Q	A	L	T	E	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	F	L	R	V	A	T	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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