Job Description P25519 Confidence 99.74% Date Thu Jan 5 11:41:54 GMT 2012 Rank 84 Aligned Residues 156 % Identity 22% Template c1mj1A_ PDB info PDB header:ribosome Chain: A: PDB Molecule:elongation factor tu; PDBTitle: fitting the ternary complex of ef-tu/trna/gtp and ribosomal proteins2 into a 13 a cryo-em map of the coli 70s ribosome Resolution 13.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.																		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	V	S	L	V	G	Y	T	N	A	G	K	S	T	L	F	N	R	I	T	E	A	R	V	Y	A	A	D	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	T	L	D	P	T	L	R	R	I	D	V	A	D	V	G	E	T	V	L	A	D	T	V	G	F	I	R	H	L	P	H
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.														.	.	.	.	.	.
Template Conservation																																																														.														.	.	.	.	.	.
Template Sequence		N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	L	T	Y	V	A	A	A	E	N	R	N	V	E	V	K	D	Y	G	D	I	D	K	A	R	E	E	R	A	R	G	I	T	I	N	T	A	H	V	E	Y	E	T	.	A	K	R	H	Y	S	H	V	D	C	R	G	H	.	.	.	.	.	.
Template Known Secondary structure								S	T	T	S	S																S	T	T										S		S						T	T	S			S									.	S	S											S	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.														.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																																																				.																							.	.	.	.	.	.	.
Query SS confidence																																																				.																							.	.	.	.	.	.	.
Query Sequence		D	L	V	A	A	F	K	A	T	L	Q	E	T	R	Q	A	T	L	L	L	H	V	I	D	A	A	D	V	R	V	Q	E	N	I	E	A	V	N	T	V	L	E	E	I	D	A	H	E	I	P	.	T	L	L	V	M	N	K	I	D	M	L	E	D	F	E	P	R	I	D	R	D	E	.	.	.	.	.	.	.
Query Conservation																																																				.																							.	.	.	.	.	.	.
Alig confidence		.	.																														.	.	.	.																.																							.	.	.	.	.	.	.
Template Conservation		.	.																														.	.	.	.
Template Sequence		.	.	A	D	Y	I	K	N	M	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	S	A	A	D	G	R	M	R	.	.	.	.	Q	T	R	E	H	I	L	L	A	R	Q	V	G	V	R	Y	I	V	V	F	M	N	K	V	D	M	V	D	D	R	E	L	L	D	L	V	E	M	E	V	R	D	L	L	N
Template Known Secondary structure		.	.	G	G	G									T	T		S	S							T	T	T		S			.	.	.	.												T	T											G	G	G
Template Predicted Secondary structure		.	.																														.	.	.	.
Template SS confidence
				86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.					.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
							334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350																			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	E	N	K	P	N	R	V	W	L	S	A	Q	T	G	A	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	L	F	Q	A	L	T	E	R	L	S	G	E	V	A	Q
Query Conservation		.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	Y	E	F	R	G	D	E	V	R	V	I	R	G	S	A	L	L	A	L	E	E	M	H	K	N	R	K	T	K	R	G	E	N	E	W	V	D	K	I	W	E	L	L	D	A	I	D	E	Y	I	R	T	R	V	R	D
Template Known Secondary structure			T	T	S		T	T	T	S																		T	T			T	T	T																	T	S						B
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions