Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFF6
Confidence96.71%DateThu Jan 5 11:26:07 GMT 2012
Rank96Aligned Residues61
% Identity21%Templated2ja9a1
SCOP infoOB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like
Resolution2.20

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   129130.........140.........150.........160.........170 .........180.........
Predicted Secondary structure 












......







Query SS confidence 









































. . . . . .


















Query Sequence  QFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPR. . . . . . ENFRPGDRVRGVLYSVRPE
Query Conservation 

    



 
 
 
 
     
 

   

 

  



 ......
    





 
  
   
Alig confidence 









































......


















Template Conservation 

 
  

 


 
       
 


 
      
    
 




 

 
  



 


     
Template Sequence  RYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKE
Template Known Secondary structure 




TT

SSSSTTS

TTSSTT

SSS




TT


TT
Template Predicted Secondary structure 







































Template SS confidence 


































































   63......70.........80.........90.........100.........110.........120.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions