Job Description P0AFF6 Confidence 98.28% Date Thu Jan 5 11:26:07 GMT 2012 Rank 61 Aligned Residues 70 % Identity 16% Template c3psiA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(239-1451) Resolution 3.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.								.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.
Query Sequence		H	E	G	E	I	I	T	G	V	V	K	K	V	N	R	D	N	I	S	L	D	L	G	N	N	A	E	A	V	I	L	R	E	D	M	L	.	.	.	.	.	.	.	P	R	E	N	F	R	P	G	D	R	V	R	G	V	L	Y	S	V	R	P	E	A	R	G	A	Q	L	F	V	T	R	S	K	P	E	M
Query Conservation																																						.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.																								.	.
Template Conservation																																																																				.	.
Template Sequence		F	K	G	S	I	I	P	V	R	V	E	R	F	W	H	N	D	I	I	C	T	T	N	S	E	V	E	C	V	V	N	A	Q	R	H	A	G	A	Q	L	R	R	P	A	N	E	I	Y	E	I	G	K	T	Y	P	A	K	V	I	Y	I	D	Y	A	N	I	.	.	T	A	E	V	S	L	L	D	H	D	V
Template Known Secondary structure			T	T												S	S							T	T	S							T	T	S	S	S	S	T	T	S		S		S	T	T	T	S		T	T												G	G	G	T	.	.
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		1133	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.			.	1200	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions