Job Description P0AFF6 Confidence 21.81% Date Thu Jan 5 11:26:07 GMT 2012 Rank 298 Aligned Residues 101 % Identity 12% Template c3psfA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259) Resolution 2.59 Å

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		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.			.	430	.	.	.	.	.	.	.	.	.	440	.	.	.								.	.	.	.	.	.
Predicted Secondary structure																																																				.	.																.	.	.	.	.	.	.
Query SS confidence																																																				.	.																.	.	.	.	.	.	.
Query Sequence		S	T	L	E	E	L	A	Y	V	P	M	K	E	L	L	E	I	E	G	L	D	E	P	T	V	E	A	L	R	E	R	A	K	N	A	L	A	T	I	A	Q	A	Q	E	E	S	L	G	D	N	.	.	K	P	A	D	D	L	L	N	L	E	G	V	D	R	D	.	.	.	.	.	.	.	L	A	F	K	L	A
Query Conservation																																																				.	.																.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.														.	.																.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.
Template Sequence		D	E	V	A	I	R	Y	Q	N	S	E	R	A	A	Q	E	F	P	N	K	P	P	L	V	K	Y	C	I	.	.	.	.	.	.	.	.	.	A	L	A	R	Y	M	H	S	P	L	L	E	Y	A	N	L	T	S	E	E	V	R	S	L	S	I	H	P	H	Q	N	L	L	S	S	E	Q	L	S	W	A	L	E
Template Known Secondary structure			T	T						T	S							S	T	T										.	.	.	.	.	.	.	.	.															T	S							T	S				T	T	G	G	G	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.
Template SS confidence
		851	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.										.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.
		450	.	.	.	.	.	.	.						.	.	460	.	.	.						.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.							.	.	.	.	.
Query SS confidence										.	.	.	.	.							.	.	.	.	.
Query Sequence		A	R	G	V	C	T	L	E	.	.	.	.	.	D	L	A	E	Q	G	.	.	.	.	.	I	D	D	L	A	D	I	E	G	L	T	D	E	K	A	G	A	L	I	M	A	A	R	N	I	C
Query Conservation										.	.	.	.	.							.	.	.	.	.
Alig confidence				.						.	.	.	.	.							.	.	.	.	.
Template Conservation				.
Template Sequence		T	A	.	F	V	D	I	V	N	L	V	S	V	E	V	N	K	A	T	D	N	N	Y	Y	A	S	A	L	K	Y	I	S	G	F	G	K	R	K	A	I	D	F	L	Q	S	L	Q	R	L	N
Template Known Secondary structure				.																	T						T	T	G	G	G	S	T	T																T
Template Predicted Secondary structure				.
Template SS confidence
		922	.		.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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