 |
Job Description | P0AFF6 | Confidence | 77.25% | Date | Thu Jan 5 11:26:07 GMT 2012 |
Rank | 207 | Aligned Residues | 61 |
% Identity | 16% | Template | c3d0fA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca; |
PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718
|
Resolution | 1.64 Å |
|
 |
  |   |
120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | 170 | . | . | . | . | . | . | . | . | . | 180 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | A | E | R | A | M | V | V | D | Q | F | R | E | H | E | G | E | I | I | T | G | V | V | K | K | V | N | R | D | N | I | S | L | D | L | G | N | N | A | E | A | V | I | L | R | E | D | M | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | R | E | N | F | R | P | G | D | R | V | R | G |
Query Conservation |   |
|   |
|
|
|   |
|   |   |
|
|   |   |   |   |
|
|
|
|   |
|   |
|   |
|   |
|   |   |   |   |   |
|   |
|
|   |   |   |
|
|   |
|
|   |   |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|   |
|   |   |   |   |
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |   |   | . |   |
|   |
|   |
|
|
|
|
|   |
|   |   |   |   |
|   |
|   |   |   |   |
|   |   |   |   |
|   |   |   |   |
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|
|
|   |
|
Template Sequence |   |
R | E | A | L | Q | D | I | X | Q | D | I | G | N | . |
S | D | D | I | L | A | A | V | V | L | S | A | T | P | G | A | V | E | A | F | R | K | N | G | E | T | I | R | I | T | G | D | G | L | K | A | A | H | R | F | L | S | N | D | P | K | I | G | E | K | R | I | R | P | G | A | L | I | R | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T | T | S |
| T | . | T | T | T |
|  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  | T | T | S |
|  |  |  |  |
| G | G | G | G | S | T | T | G | G | G | T | T | T |
| T | T | T | G | G | G | S |
|
| T | T |
|  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
| . |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
334 | . | . | . | . | . | 340 | . | . | . | . | . | . | |
. | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|