Job Description P0AFF6 Confidence 69.65% Date Thu Jan 5 11:26:07 GMT 2012 Rank 219 Aligned Residues 67 % Identity 31% Template c2xr1A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei Resolution 2.59 Å

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		272	.	.	.	.	.	.	.	280	.	.	.	.	.																							.	.	.	.	290	.	.																.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	I	V	L	W	D	D	N	P	A	Q	F	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	M	A	P	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	S	I	V	V	D	E	D	K	H	T	M	D	I	A	V	E	A	G	N	L
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																																																																																	.
Template Sequence		Q	L	V	L	Y	T	E	E	P	R	K	F	A	D	D	G	N	I	I	R	N	L	A	K	E	L	R	T	R	I	A	M	R	P	D	P	R	V	L	A	T	P	E	D	S	I	S	I	I	E	E	V	V	P	K	E	S	V	I	S	S	Y	Y	F	D	P	D	S	G	E	V	I	I	E	A	E	K	P	G	.
Template Known Secondary structure								S									T											T	S								G	G	G															S		G	G	G									T	T	T	S							S	S			.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	A	I	G	R	N	G	Q	N	V	R	L	A	S	Q	L	S	G	W	E	L	N	V	M	T
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	L	V	I	G	K	H	G	A	T	L	R	E	I	T	K	Q	I	G	W	I	P	K	V	V	R
Template Known Secondary structure		.					S	S	S												S
Template Predicted Secondary structure		.
Template SS confidence
			112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions