Job Description P0AFF6 Confidence 100.00% Date Thu Jan 5 11:26:07 GMT 2012 Rank 6 Aligned Residues 129 % Identity 98% Template c2kwpA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation protein nusa; PDBTitle: solution structure of the aminoterminal domain of e. coli nusa Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	K	E	I	L	A	V	V	E	A	V	S	N	E	K	A	L	P	R	E	K	I	F	E	A	L	E	S	A	L	A	T	A	T	K	K	K	Y	E	Q	E	I	D	V	R	V	Q	I	D	R	K	S	G	D	F	D	T	F	R	R	W	L	V	V	D	E	V	T	Q	P	T	K	E	I	T	L	E	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	N	K	E	I	L	A	V	V	E	A	V	S	N	E	K	A	L	P	R	E	K	I	F	E	A	L	E	S	A	L	A	T	A	T	K	K	K	Y	E	Q	E	I	D	V	R	V	Q	I	D	R	K	S	G	D	F	D	T	F	R	R	W	L	V	V	D	E	V	T	Q	P	T	K	E	I	T	L	E	A	A
Template Known Secondary structure																																										S										T	T	T	T												T	T		S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	E	D	E	S	L	N	L	G	D	Y	V	E	D	Q	I	E	S	V	T	F	D	R	I	T	T	Q	T	A	K	Q	V	I	V	Q	K	V	R	E	A	E	R	A	M	V	V	D	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Y	E	D	E	S	L	N	L	G	D	Y	V	E	D	Q	I	E	S	V	T	F	D	R	I	T	T	Q	T	A	K	Q	V	I	V	Q	K	V	R	E	A	E	R	A	M	L	V	P	R
Template Known Secondary structure						T	T			T	T												G	G	G	S																					S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions