Job Description P0AFF6 Confidence 96.89% Date Thu Jan 5 11:26:07 GMT 2012 Rank 91 Aligned Residues 118 % Identity 16% Template c2jvzA_ PDB info PDB header:splicing Chain: A: PDB Molecule:far upstream element-binding protein 2; PDBTitle: solution nmr structure of the second and third kh domains2 of ksrp Resolution UNK

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		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.															.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.										.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Query Sequence		D	P	V	G	A	C	V	G	M	R	G	A	R	V	Q	A	V	S	T	E	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	R	I	D	I	V	L	W	D	D	N	P	A	Q	F	V	I	N	A	M	.	.	.	.	.	.	.	.	.	A	P	A	D	V	A	S	I	V	V	D	E	D	K
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	A	G	L	V	I	G	K	G	G	E	T	I	K	Q	L	Q	E	R	A	G	V	K	M	I	L	I	Q	D	G	S	Q	N	T	N	V	D	K	P	L	R	I	I	G	D	P	Y	K	V	Q	Q	A	C	E	M	V	M	D	I	L	R	E	R	D	Q	G	G	F	G	D	R	N	E	Y	G	S	R	I	G
Template Known Secondary structure		T						T		T	T	T									T	S		S								T	T	S	S	S	S	S																								T	T		S	S	S				S	S		S	S		T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.								.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.
Query Sequence		H	T	M	D	I	A	V	E	A	G	N	L	A	Q	A	I	G	R	N	G	Q	N	V	R	L	A	S	Q	L	S	G	W	E	L	N	V	M	T	V	D	D	L	Q	A	K	H	.	.	.	.	.	.	.	Q	A	E	A	H	A	A	I	D	T	F	T	K	Y	L
Query Conservation																																																.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	I	D	V	P	V	P	R	H	S	V	G	V	V	I	G	R	S	G	E	M	I	K	K	I	Q	N	D	A	G	V	R	I	Q	F	K	Q	D	D	G	T	G	P	E	K	I	A	H	I	M	G	P	P	D	R	C	E	H	A	A	R	I	I	N	D	L	L
Template Known Secondary structure		S	S	B						T	T	T							S	S	S										T											T	T	S	S								S
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions