Job Description P0AFF6 Confidence 98.26% Date Thu Jan 5 11:26:07 GMT 2012 Rank 62 Aligned Residues 74 % Identity 22% Template c2c35F_ PDB info PDB header:polymerase Chain: F: PDB Molecule:dna-directed rna polymerase ii 19 kda PDBTitle: subunits rpb4 and rpb7 of human rna polymerase ii Resolution 2.70 Å

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		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.																			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	R	E	H	E	G	E	I	I	T	G	V	V	K	K	V	N	R	D	N	I	S	L	D	L	G	N	N	A	E	A	V	I	L	R	E	D	M	L	P	R	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	P	G	D	R	V	R	G	V	L	Y	S	V	R	P	E	A	R
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.
Template Sequence		F	R	P	F	K	G	E	V	V	D	A	V	V	T	Q	V	N	K	V	G	L	F	T	E	I	G	.	P	M	S	C	F	I	S	R	H	S	I	P	S	E	M	E	F	D	P	N	S	N	P	P	C	Y	K	T	M	D	E	D	I	V	I	Q	Q	D	D	E	I	R	L	K	I	V	G	T	R	V	D	K	N
Template Known Secondary structure						T	T												T	T							T	.	T							G	G	G	S		S	S					S	S	S	S	S						T	T	S	S					T	T														T	T
Template Predicted Secondary structure																												.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	Q	L	F	V	T	R	S	K	P	E	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	F	A	I	G	S	L	M	D	D	Y	L
Template Known Secondary structure											S	T	T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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