Job Description P0AFF6 Confidence 100.00% Date Thu Jan 5 11:26:07 GMT 2012 Rank 4 Aligned Residues 217 % Identity 39% Template c2asbA_ PDB info PDB header:transcription/rna Chain: A: PDB Molecule:transcription elongation protein nusa; PDBTitle: structure of a mycobacterium tuberculosis nusa-rna complex Resolution 1.50 Å

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		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																					.	.	.	.							.	.	.
Query SS confidence																					.	.	.	.							.	.	.
Query Sequence		R	E	H	E	G	E	I	I	T	G	V	V	K	K	V	N	R	D	N	.	.	.	.	I	S	L	D	L	G	.	.	.	N	N	A	E	A	V	I	L	R	E	D	M	L	P	R	E	N	F	R	P	G	D	R	V	R	G	V	L	Y	S	V	R	P	E	A	R	G	A	Q	L	F	V	T	R	S	K	P	E
Query Conservation																					.	.	.	.							.	.	.
Alig confidence																					.	.	.	.							.	.	.
Template Conservation
Template Sequence		S	T	R	E	G	E	I	V	A	G	V	I	Q	R	D	S	R	A	N	A	R	G	L	V	V	V	R	I	G	T	E	T	K	A	S	E	G	V	I	P	A	A	E	Q	V	P	G	E	S	Y	E	H	G	N	R	L	R	C	Y	V	V	G	V	T	R	G	A	R	E	P	L	I	T	L	S	R	T	H	P	N
Template Known Secondary structure					T	T																T	T								S	S	S	S								G	G	G	S		T	T					T	T														S	S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	I	E	L	F	R	I	E	V	P	E	I	G	E	E	V	I	E	I	K	A	A	A	R	D	P	G	S	R	A	K	I	A	V	K	T	N	D	K	R	I	D	P	V	G	A	C	V	G	M	R	G	A	R	V	Q	A	V	S	T	E	L	G	G	E	R	I	D	I	V	L	W	D	D	N	P	A	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	R	K	L	F	S	L	E	V	P	E	I	A	D	G	S	V	E	I	V	A	V	A	R	E	A	G	H	R	S	K	I	A	V	R	S	N	V	A	G	L	N	A	K	G	A	C	I	G	P	M	G	Q	R	V	R	N	V	M	S	E	L	S	G	E	K	I	D	I	I	D	Y	D	D	D	P	A	R	F
Template Known Secondary structure																T	T	S										T	T	T									S	S	T	T										G	G	G										T	T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		V	I	N	A	M	A	P	A	D	V	A	S	I	V	V	.	D	E	D	K	H	T	M	D	I	A	V	E	A	G	N	L	A	Q	A	I	G	R	N	G	Q	N	V	R	L	A	S	Q	L	S	G	W	E	L	N	V	M	T	V	D	D	L	Q	A	K
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		V	A	N	A	L	S	P	A	K	V	V	S	V	S	V	I	D	Q	T	A	R	A	A	R	V	V	V	P	D	F	Q	L	S	L	A	I	G	K	E	G	Q	N	A	R	L	A	A	R	L	T	G	W	R	I	D	I	R	G	D	A	P	P	P	P	P
Template Known Secondary structure						T	T	T	S			S							T	T	T	T								G	G	G							G	G	G											S								S	S			S
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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