Job Description P0AFF6 Confidence 95.43% Date Thu Jan 5 11:26:07 GMT 2012 Rank 112 Aligned Residues 91 % Identity 20% Template c2anrA_ PDB info PDB header:rna-binding protein/rna Chain: A: PDB Molecule:neuro-oncological ventral antigen 1; PDBTitle: crystal structure (ii) of nova-1 kh1/kh2 domain tandem with 25nt rna2 hairpin Resolution 1.94 Å

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		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.																.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	A	C	V	G	M	R	G	A	R	V	Q	A	V	S	T	E	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	R	I	D	I	V	L	W	D	D	N	P	A	Q	F	V	I	N	A	M	A	P	A	D	V	A	S	I	V	V	D	E	D	K	H	T	M	D	I	A	V	E	A	G
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	S	I	I	G	K	G	G	Q	T	I	V	Q	L	Q	K	E	T	G	A	T	I	K	L	S	K	S	K	D	F	Y	P	G	T	T	E	R	V	C	L	I	Q	G	T	I	E	A	L	N	A	V	H	G	F	I	A	E	K	I	R	E	X	P	Q	N	P	D	R	A	N	Q	V	K	I	I	V	P	N	S
Template Known Secondary structure								G	G	G																			T	T		B		T	T	S	S																									T							G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	A	Q	A	I	G	R	N	G	Q	N	V	R	L	A	S	Q	L	S	G	W	E	L	N	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	G	L	I	I	G	K	G	G	A	T	V	K	A	I	X	E	Q	S	G	A	W	V	Q	L
Template Known Secondary structure									G	G	G										S	S
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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