Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFF6
Confidence99.48%DateThu Jan 5 11:26:07 GMT 2012
Rank19Aligned Residues66
% Identity100%Templatec1wcnA_
PDB info PDB header:rna-binding proteinChain: A: PDB Molecule:transcription elongation protein nusa; PDBTitle: nmr structure of the carboxyterminal domains of escherichia2 coli nusa
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   430.........440.........450.........460.........470.........480.........490.....
Predicted Secondary structure 































Query SS confidence 

































































Query Sequence  PADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWFGDEA
Query Conservation    
 



  

   
  


    





 

 


  
 


   
 


  

    
  

Alig confidence 

































































Template Conservation 
 



 
 
 
 


  

   
 
 










  
     
 
  





   

 

 
Template Sequence  PADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWFGDEA
Template Known Secondary structure 

SSTT

TTT

STS
TSSS

TT
TT
Template Predicted Secondary structure 





















Template SS confidence 

































































   430.........440.........450.........460.........470.........480.........490.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions