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Job DescriptionP0AFF6
Confidence99.89%DateThu Jan 5 11:26:07 GMT 2012
Rank13Aligned Residues133
% Identity26%Templatec1v9pB_
PDB info PDB header:ligaseChain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   345....350.........360.........370........ .380.........390.........400.........410.........420...
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Query Sequence  QAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGF. STLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEE
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Template Sequence  AKRFEAIRHYASRKAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNL. . . . . . . LRQIEESKHR
Template Known Secondary structure  GGSTTTT

TT

TS
SSGGGGTGGG
TTSS

SSS.......TTTGGGS
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   2432.......2440.........2450.........2460.........2470.........2480.........2490.... .....2500....
 
   424.....430.........440.........450.........460.........470.........480.........490....
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Query Sequence  SLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWFGDE
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Template Sequence  GLERLLYA. . . LGLPGVGEVLARNLARR. FGTMDRLLEASLEELLEVEEVGELTARAI. . . . . . LETLKDP
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   2505....2510.. .......2520......... 2530.........2540.........2550........ .2560.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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