Job Description P0AFF6 Confidence 98.00% Date Thu Jan 5 11:26:07 GMT 2012 Rank 66 Aligned Residues 74 % Identity 12% Template c1nt9G_ PDB info PDB header:transcription, transferase Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kd polypeptide; PDBTitle: complete 12-subunit rna polymerase ii Resolution 4.20 Å

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		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170																	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	R	E	H	E	G	E	I	I	T	G	V	V	K	K	V	N	R	D	N	I	S	L	D	L	G	N	N	A	E	A	V	I	L	R	E	D	M	L	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	F	R	P	G	D	R	V	R	G	V	L	Y	S	V	R	P	E	A	R	G	A
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.
Template Sequence		F	K	P	F	K	G	E	V	V	D	G	T	V	V	S	C	S	Q	H	G	F	E	V	Q	V	G	.	P	M	K	V	F	V	T	K	H	L	M	P	Q	D	L	T	F	N	A	G	S	N	P	P	S	Y	Q	S	S	E	D	V	I	T	I	K	S	R	I	R	V	K	I	E	G	C	I	S	Q	V	S	S	I
Template Known Secondary structure						T	T												T	T							S	.	S	S						T	T	T	S	S	S	S				B	T	T					S	S	S						S	S														S	S
Template Predicted Secondary structure																												.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	F	V	T	R	S	K	P	E	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	A	I	G	S	I	K	E	D	Y	L
Template Known Secondary structure							S	T	T		S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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