Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFF6
Confidence95.78%DateThu Jan 5 11:26:07 GMT 2012
Rank110Aligned Residues81
% Identity26%Templatec1j4wA_
PDB info PDB header:transcription/dnaChain: A: PDB Molecule:fuse binding protein; PDBTitle: complex of the kh3 and kh4 domains of fbp with a2 single_stranded 29mer dna oligonucleotide from the fuse3 element of the c-myc oncogene
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   248.250.........260.........270.........280.........290.........300.. .......310.
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Query Sequence  VGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDK. . . . . . . . . . . . . . . . HTMDIAVEA
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Template Sequence  VGIVIGRNGEMIKKIQNDA. GVRIQFKPDDGT. . . . . . . . . TPERIAQITGPPDRAQHAAEIITDLLRSVQQEFNFIVPT
Template Known Secondary structure 
GGG.



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   14.....20.........30.. .......40.... .....50.........60.........70.........80...
 
   312.......320.........330........
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Query Sequence  GNLAQAIGRNGQNVRLASQLSGWELNV
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Template Sequence  GKTGLIIGKGGETIKSISQQSGARIEL
Template Known Secondary structure  TT
GGG

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   113......120.........130.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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