Job Description P0AFF6 Confidence 100.00% Date Thu Jan 5 11:26:07 GMT 2012 Rank 2 Aligned Residues 342 % Identity 35% Template c1hh2P_ PDB info PDB header:transcription regulation Chain: P: PDB Molecule:n utilization substance protein a; PDBTitle: crystal structure of nusa from thermotoga maritima Resolution 2.1 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	K	E	I	L	A	V	V	E	A	V	S	N	E	K	A	L	P	R	E	K	I	F	E	A	L	E	S	A	L	A	T	A	T	K	K	K	Y	E	Q	E	I	D	V	R	V	Q	I	D	R	K	S	G	D	F	D	T	F	R	R	W	L	V	V	D	E	V	T	Q	P	T	K	E	I	T	L	E	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	N	I	G	L	L	E	A	L	D	Q	L	E	E	E	K	G	I	S	K	E	E	V	I	P	I	L	E	K	A	L	V	S	A	Y	R	K	N	F	G	N	S	K	N	V	E	V	V	I	D	R	N	T	G	N	I	K	V	Y	Q	L	L	E	V	V	E	E	V	E	D	P	A	T	Q	I	S	L	E	E	A
Template Known Secondary structure					S	S		S	S	T	T	T	T	S	S	S	S																					T	T	T		S	S	S								S	T	T													S	S		S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	E	D	E	S	L	N	L	G	D	Y	V	E	D	Q	I	E	S	V	T	F	D	R	I	T	T	Q	T	A	K	Q	V	I	V	Q	K	V	R	E	A	E	R	A	M	V	V	D	Q	F	R	E	H	E	G	E	I	I	T	G	V	V	K	K	V	N	R	D	N	I	S	L	D	L	G	N	N	A	E	A
Query Conservation
Alig confidence																																																																													.
Template Conservation																																																																													.
Template Sequence		K	K	I	D	P	L	A	E	V	G	S	I	V	K	K	E	L	N	V	K	N	F	G	R	I	A	A	Q	T	A	K	Q	V	L	I	Q	R	I	R	E	L	E	K	E	K	Q	F	E	K	Y	S	E	L	K	G	T	V	T	T	A	E	V	I	R	V	M	G	E	W	A	D	I	R	I	G	.	K	L	E	T
Template Known Secondary structure						T	T			T	T												S	S	S		S	G	G	G													T	T			S	S			T	T			T	T												S	S							T	.	T
Template Predicted Secondary structure																																																																													.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	L	R	E	D	M	L	P	R	E	N	F	R	P	G	D	R	V	R	G	V	L	Y	S	V	R	P	E	A	R	G	A	Q	L	F	V	T	R	S	K	P	E	M	L	I	E	L	F	R	I	E	V	P	E	I	G	E	E	V	I	E	I	K	A	A	A	R	D	P	G	S	R	A	K	I	A	V	K	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	P	K	K	E	W	I	P	G	E	E	I	K	A	G	D	L	V	K	V	Y	I	I	D	V	V	K	T	T	K	G	P	K	I	L	V	S	R	R	V	P	E	F	V	I	G	L	M	K	L	E	I	P	E	V	E	N	G	I	V	E	I	K	A	I	A	R	E	P	G	V	R	T	K	V	A	V	A	S
Template Known Secondary structure					G	G	G	S		T	T					T	T														T	T								S	S	S																		S	S										T	T	T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		N	D	K	R	I	D	P	V	G	A	C	V	G	M	R	G	A	R	V	Q	A	V	S	T	E	L	G	G	E	R	I	D	I	V	L	W	D	D	N	P	A	Q	F	V	I	N	A	M	A	P	A	D	V	A	S	I	V	V	.	D	E	D	K	H	T	M	D	I	A	V	E	A	G	N	L	A	Q	A	I	G
Query Conservation																																																												.
Alig confidence																																																												.
Template Conservation
Template Sequence		N	D	P	N	V	D	P	I	G	A	C	I	G	E	G	G	S	R	I	A	A	I	L	K	E	L	K	G	E	K	L	D	V	L	K	W	S	D	D	P	K	Q	L	I	A	N	A	L	A	P	A	T	V	I	E	V	E	I	L	D	K	E	N	K	A	A	R	V	L	V	P	P	T	Q	L	S	L	A	I	G
Template Known Secondary structure		S	S	T	T	S									T	T	S	T	T								T	T	T										S	S									T		S	S			S							T	T	T	T								T	T	S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	G	Q	N	V	R	L	A	S	Q	L	S	G	W	E	L	N	V	M	T	V	D	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G	G	Q	N	A	R	L	A	A	K	L	T	G	W	K	I	D	I	K	P	I	M	N
Template Known Secondary structure		G	G	G											S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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