Job Description P00811 Confidence 99.42% Date Thu Jan 5 10:56:54 GMT 2012 Rank 27 Aligned Residues 240 % Identity 18% Template d1n9ba_ SCOP info beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase Resolution 0.90

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																							.	.																																																								.	.
Query SS confidence																							.	.																																																								.	.
Query Sequence		R	T	I	T	P	L	I	E	Q	Q	K	I	P	G	M	A	V	A	V	I	Y	.	.	Q	G	K	P	Y	Y	F	T	W	G	Y	A	D	I	A	K	K	Q	P	V	T	Q	Q	T	L	F	E	L	G	S	V	S	K	T	F	T	G	V	L	G	G	D	A	I	A	R	G	E	I	K	L	S	D	P	T	.	.
Query Conservation																							.	.																																																								.	.
Alig confidence															.								.	.									.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Conservation															.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	Q	I	K	L	S	E	S	Q	L	S	G	R	.	V	G	M	I	E	M	D	L	A	S	G	R	T	L	T	A	W	.	.	.	.	.	.	.	.	.	.	.	.	R	A	D	E	R	F	P	M	M	S	T	F	K	V	V	L	C	G	A	V	L	A	R	V	D	A	G	D	E	Q	L	E	R	K	I	H	Y
Template Known Secondary structure												T	S		.								T	T	T								.	.	.	.	.	.	.	.	.	.	.	.	S	T	T	S					G	G	G															T	T	S			T	T
Template Predicted Secondary structure															.																		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60													.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
							106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	T	K	Y	W	P	E	L	T	A	K	Q	W	N	G	I	T	L	L	H	L	A	T	Y	T	A	G	G	L	P	L	Q	V	P	D	E	V	K	S	S	S	D	L	L	R	F	Y	Q	N	W	Q	P	A	W	A	P	G	T	Q	R	L	Y	A	N	S	S	I	G	L	F	G	A	L	A	V	K
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	Q	Q	D	L	V	D	Y	S	P	V	S	E	K	H	L	A	D	G	M	T	V	G	E	L	C	A	A	A	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	S	D	N	S	A	A	N	L	L	L	A	T
Template Known Secondary structure			G	G	G			S			T	T	G	G	G	G	T	T	T														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.																																					.	130	.	.	.	.	.	.	.	.	.	140	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	G	L	S	F	E	Q	A	M	Q	T	R	V	F	Q	P	L	K	L	N	H	T	W	I	N	V	P	P	A	E	E	K	N	Y	A	W	G	Y	R	E	G	K	A	V	H	V	S	P	G	A	L	D	A	E	A	Y	G	V	K	S	T	I	E	D	M	A	R	W	V	Q	S	N	L	K	P	L	D	I	N
Query Conservation
Alig confidence					.	.	.							.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.							.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	G	.	.	.	P	A	G	L	T	A	.	F	L	R	Q	I	G	D	N	V	T	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	R	W	E	T	E	L	N	E	A	L	P	G	D	A	R	D	T	T	T	P	A	S	M	A	A	T	L	R	K	L	L	T	S	Q	R	L	S
Template Known Secondary structure		T	T		.	.	.							.					T	T			S		B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	G	G	G				T	T			T	T																	S	S	S	S
Template Predicted Secondary structure					.	.	.							.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		142	.	.				.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.																		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		E	K	T	L	Q	Q	G	I	Q	L	A	Q	S	R	Y	W	Q	T	G	D	M	Y	Q	G	L	G	W	E	M	L	D	W	P	V	N	P	D	S	I	I	N	G	S	D	N	K	I	A	L	A	A	R	P	V	K	A	I	T	P	P	T	P	A	V	R	A	S	W	V	H	K	T	G	A	T	G	.	.	G	F
Query Conservation																																																																														.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	R	S	Q	R	Q	L	L	Q	W	M	V	D	D	R	V	A	G	P	L	I	R	S	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	G	W	F	I	A	D	K	T	G	A	S	E	R	G	A	R
Template Known Secondary structure														T		S	S	S						T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T											T	T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.																																						.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		339	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure											.	.											.
Query SS confidence											.	.											.
Query Sequence		G	S	Y	V	A	F	I	P	E	.	.	K	E	L	G	I	V	M	L	A	N	.	K	N	Y	P	N	P	A	R	V	D	A	A	W	Q	I	L	N	A	L
Query Conservation											.	.											.
Alig confidence											.	.											.
Template Conservation
Template Sequence		G	I	V	A	L	L	G	P	N	N	K	A	E	R	I	V	V	I	Y	L	R	D	T	P	A	S	M	A	E	R	N	Q	Q	I	A	G	I	G	A	A	L
Template Known Secondary structure									S	T	T												S
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions