Phyre 2 alignment of P00811 with d1e25a

Job Description P00811
Confidence 99.22% Date Thu Jan 5 10:56:54 GMT 2012

Rank 39 Aligned Residues 260

% Identity 14% Template d1e25a_

SCOP info beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase

Resolution 1.9

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence	I	V	H	R	T	I	T	P	L	I	E	Q	Q	K	I	P	G	M	A	V	A	V	.	I	Y	Q	G	K	P	Y	Y	F	T	W	G	Y	A	D	I	A	K	K	Q	P	V	T	Q	Q	T	L	F	E	L	G	S	V	S	K	T	F	T	G	V	L	G	G	D	A	I	A	R	G	E	I	K	L	S	D	P	T
Query Conservation																							.
Alig confidence																							.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	L	K	E	Q	I	E	S	I	V	I	G	K	K	A	T	V	G	V	A	V	W	G	P	D	D	L	E	P	L	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	F	E	K	F	P	M	Q	S	V	F	K	L	H	L	A	M	L	V	L	H	Q	V	D	Q	G	K	L	D	L	N	Q	T	V
Template Known Secondary structure											T	T	S	S	S									T	T		S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T						G	G	G															T	T	S	S		T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.														60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.

	106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	K	Y	W	P	E	L	T	A	K	Q	W	N	G	I	T	L	L	H	L	A	T	Y	T	A	G	G	L	P	L	Q	V	P	D	E	V	K	S	S	S	D	L	L	R	F	Y	Q	N	W	Q	P	A	W	A	P	G	T	Q	R	L	Y	A	N	S	S	I	G	L	F	G	A	L	A	V	K	P	S	G	L	S
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Sequence	I	V	N	R	A	K	V	L	Q	N	T	W	A	P	I	M	K	A	Y	Q	G	D	E	F	S	V	.	.	.	.	.	.	.	.	.	.	.	P	V	Q	Q	L	L	Q	Y	S	V	S	.	.	.	.	.	.	.	.	.	.	.	H	S	D	N	V	A	C	D	L	L	F	E	L	V	.	.	.	.	.	.	G
Template Known Secondary structure				T	T	T	S			S	S			T					S		S	S					.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template SS confidence
	96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.												.	.	.	.	.	.	.	.	130	.	.												.	.	.	.	.	.	.	140	.	.	.	.	.	.							.

	186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	E	Q	A	M	Q	T	R	V	F	Q	P	L	K	L	N	H	T	W	I	N	V	P	P	A	E	E	K	N	Y	A	W	G	Y	R	E	G	K	A	V	H	V	S	P	G	A	L	D	A	E	A	Y	G	V	K	S	T	I	E	D	M	A	R	W	V	Q	S	N	L	K	P	L	D	I	N	E	K	T	L	Q
Query Conservation
Alig confidence								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	G	P	A	A	L	H	D	.	Y	I	Q	S	M	G	I	K	E	T	A	V	V	A	N	E	A	Q	M	H	A	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	Q	Y	Q	N	W	T	S	M	K	G	A	A	E	I	L	K	K	F	E	Q	K	T	Q	L	S	E	T	S	Q	A
Template Known Secondary structure								.					T	T			S	B													T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	G	G	G	S																T	T		S	S
Template Predicted Secondary structure								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	144	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.																		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.

	266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	G	I	Q	L	A	Q	S	R	Y	W	Q	T	G	D	M	Y	Q	G	L	G	W	E	M	L	D	W	P	V	N	P	D	S	I	I	N	G	S	D	N	K	I	A	L	A	A	R	P	V	K	A	I	T	P	P	T	P	A	V	R	A	S	W	V	H	K	T	G	A	T	G	G	F	G	S	Y	V	A	F	I
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	L	W	K	W	M	V	E	T	T	T	G	P	E	R	L	K	G	L	L	P	A	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	A	H	K	T	G	T	S	Q	I	K	A	G	K	T	A	A	T	N	D	L	G	I	I
Template Known Secondary structure								S			S		T	T	S	T	T	T	T	S		T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.																																230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

	346	.	.	.					350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.
Query SS confidence					.	.	.	.
Query Sequence	P	E	K	E	.	.	.	.	L	G	I	V	M	L	A	N	K	N	Y	P	N	P	A	R	V	D	A	A	W	Q	I	L	N	A	L
Query Conservation					.	.	.	.
Alig confidence					.	.	.	.
Template Conservation
Template Sequence	L	L	P	D	G	R	P	L	L	V	A	V	F	V	K	D	S	A	E	S	S	R	T	N	E	A	I	I	A	Q	V	A	Q	T	A
Template Known Secondary structure			T	T	S														S
Template Predicted Secondary structure
Template SS confidence
	251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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