Job Description P00811 Confidence 97.83% Date Thu Jan 5 10:56:54 GMT 2012 Rank 66 Aligned Residues 284 % Identity 15% Template c3pbqA_ PDB info PDB header:hydrolase/antibiotic Chain: A: PDB Molecule:penicillin-binding protein 3; PDBTitle: crystal structure of pbp3 complexed with imipenem Resolution 1.70 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.									.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																														.	.							.																			.	.	.	.	.	.	.	.
Query SS confidence																														.	.							.																			.	.	.	.	.	.	.	.
Query Sequence		Q	I	N	D	I	V	H	R	T	I	T	P	L	I	E	Q	Q	K	I	P	G	M	A	V	A	V	I	Y	.	.	Q	G	K	P	Y	Y	.	F	T	W	G	Y	A	D	I	A	K	K	Q	P	V	T	Q	Q	T	.	.	.	.	.	.	.	.	L	F	E	L	G	S	V	S	K	T	F	T	G	V	L	G	G
Query Conservation																														.	.							.																			.	.	.	.	.	.	.	.
Alig confidence																														.	.							.																			.	.	.	.	.	.	.	.																.	.
Template Conservation																																																																																.	.
Template Sequence		R	L	Q	Y	L	A	H	R	E	L	R	N	A	L	L	E	N	G	A	K	A	G	S	L	V	I	M	D	V	K	T	G	E	I	L	A	M	T	N	Q	P	T	Y	N	P	N	N	R	R	N	L	Q	P	A	A	M	R	N	R	A	M	I	D	V	F	E	P	G	S	T	V	K	P	F	S	M	S	A	.	.
Template Known Secondary structure																		T	T											T	T	T		B								S				T	T			S	S			T	T	T	T									B	B		G	G	G	G								.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.										.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.
Query Sequence		D	A	I	A	R	G	E	I	K	L	S	D	P	T	.	.	.	.	.	.	.	.	.	T	K	Y	W	P	E	L	T	A	K	Q	W	N	G	I	T	L	L	H	L	A	T	Y	T	A	G	G	L	P	L	Q	V	P	D	E	V	K	S	S	S	D	L	L	R	F	Y	Q	N	W	Q	P	A	W	A	P	G	T
Query Conservation																.	.	.	.	.	.	.	.	.
Alig confidence		.														.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	A	L	A	S	G	R	W	K	P	S	D	I	V	D	V	Y	P	G	T	L	Q	I	G	R	Y	T	I	R	D	V	S	R	N	S	R	Q	L	D	L	T	G	I	L	I	K	S	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.				T	T	S			T	T						T	T	S					T	T						S	S				S										T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	L	Y	A	N	S	S	I	G	L	F	G	A	L	A	V	K	P	S	G	L	S	F	E	Q	A	M	Q	T	R	V	F	Q	P	L	K	L	N	H	T	W	I	N	V	P	P	A	E	E	K	N	Y	A	W	G	Y	R	E	G	K	A	V	H	V	S	P	G	A	L	D	A	E	A	Y	G	V	K	S	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																						.	.	.	.	.																																							.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																						.	.	.	.	.																																							.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	V	G	I	S	K	I	A	F	D	I	G	A	E	S	I	Y	S	V	M	Q	Q	.	.	.	.	.	V	G	L	G	Q	D	T	G	L	G	F	P	G	E	R	V	G	N	L	P	N	H	R	K	W	P	K	A	E	T	A	T	L	A	Y	G	Y	G	.	.	.	L	S	V	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.																						.	.	.	.	.	T	T	T	T	S			S				T	T					B					S	S											T	T		S	.	.	.		B	B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																						.	.	.	.	.																																							.	.	.
Template SS confidence
											352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.						.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410				.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	D	M	A	R	W	V	Q	S	N	L	K	P	L	D	I	N	E	K	T	L	Q	Q	G	I	Q	L	A	Q	S	R	Y	W	Q	T	G	D	M	Y	Q	G	L	G	W	E	M	L	D	W	P	V	N	P	D	S	I	I	N	G	S	D	N	K	I	A	L	A	A	R	P	V	K	A	I	T	P	P	T	P
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	Q	L	A	H	A	Y	A	A	L	A	N	D	G	K	S	V	P	L	S	M	T	R	V	D	R	V	P	D	G	V	Q	V	I	S	P	E	V	A	S	T	V	Q	G	M	L	Q	Q	V	V	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	G	V	F	R	A	Q
Template Known Secondary structure														T	T	T						B	S	B			S	S								S																		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S		G	G	G
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.																				.	.	470	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.		.	340	.	.	.	.	.	.			.	.	.	350	.	.	.	.	.	.	.						.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure														.	.					.									.	.												.	.	.	.	.
Query SS confidence														.	.					.									.	.												.	.	.	.	.
Query Sequence		A	V	R	A	S	W	V	H	K	T	G	A	.	.	T	G	G	F	.	G	S	Y	V	A	F	I	P	.	.	E	K	E	L	G	I	V	M	L	A	N	.	.	.	.	.	K	N	Y	P	N	P	A	R	V	D	A	A	W	Q	I	L	N	A	L
Query Conservation														.	.					.									.	.												.	.	.	.	.
Alig confidence														.	.					.									.	.												.	.	.	.	.
Template Conservation
Template Sequence		V	P	G	Y	H	A	A	G	K	S	G	T	A	R	K	N	A	Y	R	S	L	F	A	G	F	A	P	A	T	D	P	R	I	A	M	V	V	V	I	D	E	P	S	K	A	G	Y	F	G	G	L	V	S	A	P	V	F	S	K	V	M	A	G	A
Template Known Secondary structure		B	T	T	B																							S	T	T	S														S	S								T
Template Predicted Secondary structure
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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