Job Description P00811 Confidence 96.36% Date Thu Jan 5 10:56:54 GMT 2012 Rank 78 Aligned Residues 188 % Identity 15% Template c3lo7A_ PDB info PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein a; PDBTitle: crystal structure of pbpa from mycobacterium tuberculosis Resolution 2.05 Å

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		27	.	.	30	.	.	.	.	.	.	.	.				.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70																								.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.											.									.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.											.									.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	V	H	R	T	I	T	P	L	I	E	Q	.	.	.	Q	K	I	P	G	M	A	V	A	V	.	I	Y	Q	G	K	P	Y	Y	.	F	T	W	G	Y	A	D	I	A	K	K	Q	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Q	Q	T	L	F	E	L
Query Conservation														.	.	.											.									.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.											.									.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	Q	Q	A	G	W	D	A	M	Q	Q	G	C	Y	G	P	C	K	G	A	V	V	A	L	E	P	S	T	G	K	I	L	A	L	V	S	S	P	S	Y	D	P	N	L	L	A	S	H	N	P	E	V	Q	A	Q	A	W	Q	R	L	G	D	N	P	A	S	P	L	T	N	R	A	I	S	E	T	Y	P	P
Template Known Secondary structure														B	T	T	B											T	T	T		B								S								T		S																T	T		T	T	S		T	T	T	S			B
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																															.	.	.
Query SS confidence																															.	.	.
Query Sequence		G	S	V	S	K	T	F	T	G	V	L	G	G	D	A	I	A	R	G	E	I	K	L	S	D	P	T	T	K	.	.	.	Y	W	P	E	L	T	A	K	Q	W	N	G	I	T	L	L	H	L	A	T	Y	T	A	G	G	L	P	L	Q	V	P	D	E	V	K	S	S	S	D	L	L	R	F	Y	Q	N	W	Q
Query Conservation																															.	.	.
Alig confidence													.	.	.																.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	T	F	K	V	I	T	T	A	A	.	.	.	A	L	A	A	G	A	T	E	T	E	Q	L	T	A	A	P	T	I	P	L	E	N	Y	P	C	G	D	E	P	T	V	S	L	R	E	A	F	V	K	S	C	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	G	G	G								.	.	.				T	T			T	T							S	B				B					S	S	S	S										T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.				.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	W	A	P	G	T	Q	R	L	Y	A	N	S	S	I	G	L	F	G	A	L	A	V	K	P	S	G	L	S	F	E	Q	A	M	Q	T	R	V	F	Q	P	L	K	L	N	H	T	W	I	N	V	P	P	A	E	E	K	N	Y	A	W	G	Y	R	E	G	K	A	V	H	V	S	P	G	A	L	D	A	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.							.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.							.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	F	V	Q	L	G	I	R	T	G	A	D	A	L	R	S	M	A	R	A	.	.	.	.	.	F	G	L	D	S	P	.	.	.	.	P	R	P	T	P	L	Q	V	A	E	S	T	V	G	P	I	P	D	S	A	A	L	G	M	T	S	I	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	T	T	T	T	S		.	.	.	.				S	S	S						B						S								T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.							.	.	.	.
Template SS confidence
																		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.						.	.	.	.	.	310					.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	G	V	K	S	T	I	E	D	M	A	R	W	V	Q	S	N	L	K	P	L	D	I	N	E	K	T	L	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	K	D	V	A	L	T	P	L	A	N	A	E	I	A	A	T	I	A	N	G	G	I	T	M	R	P	Y	L	V	G
Template Known Secondary structure			T	T		B	B														T	T	T						B	S
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions