Job Description P00811 Confidence 96.90% Date Thu Jan 5 10:56:54 GMT 2012 Rank 75 Aligned Residues 283 % Identity 14% Template c3equB_ PDB info PDB header:biosynthetic protein Chain: B: PDB Molecule:penicillin-binding protein 2; PDBTitle: crystal structure of penicillin-binding protein 2 from neisseria2 gonorrhoeae Resolution 2.40 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.										.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																														.	.									.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.									.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	N	D	I	V	H	R	T	I	T	P	L	I	E	Q	Q	K	I	P	G	M	A	V	A	V	I	Y	.	.	Q	G	K	P	Y	Y	F	T	.	.	.	.	.	.	.	.	.	W	G	Y	A	D	I	A	K	K	Q	P	V	T	Q	Q	T	L	F	E	L	G	S	V	S	K	T	F	T	G	V	L	G	G
Query Conservation																														.	.									.	.	.	.	.	.	.	.	.
Alig confidence																														.	.									.	.	.	.	.	.	.	.	.																																.	.
Template Conservation																																																																																.	.
Template Sequence		R	I	Q	T	L	A	Y	E	E	L	N	K	A	V	E	Y	H	Q	A	K	A	G	T	V	V	V	L	D	A	R	T	G	E	I	L	A	L	A	N	T	P	A	Y	D	P	N	R	P	G	R	A	D	S	E	Q	R	R	N	R	A	V	T	D	X	I	E	P	G	S	A	I	K	P	F	V	I	A	K	.	.
Template Known Secondary structure																		T	T		S									T	T	T		B								S				T	T	S		T	T															B			G	G	G	G								.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.							.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.
Query Sequence		D	A	I	A	R	G	E	I	K	L	S	D	P	T	T	K	Y	.	.	.	.	.	.	W	P	E	L	T	A	K	Q	W	N	G	I	T	L	L	H	L	A	T	Y	T	A	G	G	L	P	L	Q	V	P	D	E	V	K	S	S	S	D	L	L	R	F	Y	Q	N	W	Q	P	A	W	A	P	G	T	Q	R	L
Query Conservation																			.	.	.	.	.	.
Alig confidence		.																	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	A	L	D	A	G	K	T	D	L	N	E	R	L	N	T	Q	P	Y	K	I	G	P	S	P	V	R	D	T	H	V	Y	P	S	L	D	V	R	G	I	X	Q	K	S	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.					T	S	S		S	S						S					T	T						S	S			S											T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	N	S	S	I	G	L	F	G	A	L	A	V	K	P	S	G	L	S	F	E	Q	A	M	Q	T	R	V	F	Q	P	L	K	L	N	H	T	W	I	N	V	P	P	A	E	E	K	N	Y	A	W	G	Y	R	E	G	K	A	V	H	V	S	P	G	A	L	D	A	E	A	Y	G	V	K	S	T	I	E	D
Query Conservation
Alig confidence		.	.	.	.	.	.																						.	.	.	.	.																																							.	.	.
Template Conservation		.	.	.	.	.	.																						.	.	.	.	.																																							.	.	.
Template Sequence		.	.	.	.	.	.	V	G	T	S	K	L	S	A	R	F	G	A	E	E	X	Y	D	F	Y	H	E	.	.	.	.	.	L	G	I	G	V	R	X	H	S	G	F	P	G	E	T	A	G	L	L	R	N	W	R	R	W	R	P	I	E	Q	A	T	X	S	F	G	Y	G	.	.	.	L	Q	L	S	L	L	Q
Template Known Secondary structure		.	.	.	.	.	.								T	T	S												.	.	.	.	.	T	T	T	T	S					S		T	T									G	G	G											T	T		S	.	.	.			B
Template Predicted Secondary structure		.	.	.	.	.	.																						.	.	.	.	.																																							.	.	.
Template SS confidence
								365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.						.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.				.	.	.	.	.	.	430
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	R	W	V	Q	S	N	L	K	P	L	D	I	N	E	K	T	L	Q	Q	G	I	Q	L	A	Q	S	R	Y	W	Q	T	G	D	M	Y	Q	G	L	G	W	E	M	L	D	W	P	V	N	P	D	S	I	I	N	G	S	D	N	K	I	A	L	A	A	R	P	V	K	A	I	T	P	P	T	P	A	V	R
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	R	A	Y	T	A	L	T	H	D	G	V	L	L	P	L	S	F	E	K	Q	A	V	A	P	Q	G	K	R	I	F	K	E	T	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	R	N	L	X	V	S	V	T	E	P	G	G	T	G	T	A	G	A	V	D	G
Template Known Secondary structure											T	T	T						B	S	B			S	S								S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	T	S	T	T	S	S		G	G	G			T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.																					.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
		326	.	.	.	330	.	.	.				.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.						.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure										.	.	.																	.	.								.	.	.	.	.
Query SS confidence										.	.	.																	.	.								.	.	.	.	.
Query Sequence		A	S	W	V	H	K	T	G	.	.	.	A	T	G	G	F	G	S	Y	V	A	F	I	P	E	K	E	.	.	L	G	I	V	M	L	A	.	.	.	.	.	N	K	N	Y	P	N	P	A	R	V	D	A	A	W	Q	I	L	N	A	L
Query Conservation										.	.	.																	.	.								.	.	.	.	.
Alig confidence										.	.	.																	.	.								.	.	.	.	.
Template Conservation
Template Sequence		F	D	V	G	A	K	T	G	T	A	R	K	N	K	H	V	A	T	F	I	G	F	A	P	A	K	N	P	R	V	I	V	A	V	T	I	D	E	P	T	A	H	G	Y	Y	G	G	V	V	A	G	P	P	F	K	K	I	X	G	G	S
Template Known Secondary structure		S																							S	T	T	S														S	S								T
Template Predicted Secondary structure
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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