Job Description P00811 Confidence 97.53% Date Thu Jan 5 10:56:54 GMT 2012 Rank 69 Aligned Residues 302 % Identity 15% Template c2wadB_ PDB info PDB header:peptide binding protein Chain: B: PDB Molecule:penicillin-binding protein 2b; PDBTitle: penicillin-binding protein 2b (pbp-2b) from streptococcus2 pneumoniae (strain 5204) Resolution 2.18 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.								.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.							.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.										.	.																								.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.										.	.																								.	.	.	.	.	.
Query Sequence		Q	Q	I	N	D	I	V	H	R	T	I	T	P	L	I	E	Q	Q	K	I	.	.	.	.	.	.	.	P	G	M	A	V	A	V	I	Y	.	.	Q	G	K	P	Y	Y	F	T	W	G	Y	A	D	I	A	K	K	Q	P	V	T	Q	Q	.	.	.	.	.	.	T	L	F	E	L	G	S	V	S	K	T	F	T
Query Conservation																						.	.	.	.	.	.	.										.	.																								.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.										.	.									.															.	.	.	.	.	.
Template Conservation																																																.
Template Sequence		L	A	F	Q	D	S	V	D	A	L	L	K	S	Y	F	N	S	E	L	G	N	G	G	A	K	Y	S	E	G	V	Y	A	V	A	L	N	P	Q	T	G	A	V	L	S	M	S	.	G	L	K	H	D	L	K	T	G	E	L	T	P	D	S	L	G	T	V	T	N	V	F	V	P	G	S	V	V	K	A	A	T
Template Known Secondary structure																							S	T	T	T	T											T	T	T		B						.						T	T	T							T	T							B			G	G	G	G
Template Predicted Secondary structure																																																.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.										.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.													.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.													.	.
Query Sequence		G	V	L	G	G	D	A	I	A	R	G	E	I	K	L	S	D	P	T	T	.	.	.	.	.	.	.	.	.	K	Y	W	P	E	L	T	A	K	Q	W	N	.	.	G	I	T	L	L	H	L	A	T	Y	T	A	G	G	L	P	L	Q	V	P	D	E	V	K	S	S	S	D	L	L	R	F	Y	Q	N	W	Q
Query Conservation																						.	.	.	.	.	.	.	.	.													.	.
Alig confidence					.	.	.															.	.	.	.	.	.	.	.	.													.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	S	.	.	.	G	W	E	N	G	V	L	S	G	N	Q	T	L	T	D	Q	P	I	V	F	Q	G	S	A	P	I	Y	S	W	Y	K	L	A	Y	G	S	F	P	I	T	A	V	E	A	L	E	Y	S	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					.	.	.				T	T	S			S	S								B		B	T	T	S			B			T	T	T	T	T	T		S												T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		393	.	.				.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.															.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	W	A	P	G	T	Q	R	L	Y	A	N	S	S	I	G	L	F	G	A	L	A	V	K	P	S	G	L	S	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	A	M	Q	T	R	V	F	Q	P	L	K	L	N	H	T	W	I	N	V	P	P	A	E	E	K	N	Y	A	W	G	Y	R	E
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.							.								.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.								.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	V	V	Q	T	A	L	G	I	M	G	Q	T	Y	Q	P	N	M	F	V	G	T	S	N	L	E	S	A	M	G	K	L	R	S	.	T	F	G	E	Y	G	L	.	.	.	.	G	S	A	T	G	I	D	L	P	D	E	S	T	G	L	V	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T					T	T	B					T	T											.				T	T	T	T	.	.	.	.	T	S					S	S	S						B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.								.	.	.	.
Template SS confidence
																		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480		.	.	.	.	.	.	.					.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	A	V	H	V	S	P	G	A	L	D	A	E	A	Y	G	V	K	S	T	I	E	D	M	A	R	W	V	Q	S	N	L	K	P	L	D	I	N	E	K	T	L	Q	Q	G	I	Q	L	A	Q	S	R	Y	W	Q	T	G	D	M	Y	Q	G	L	G	W	E	M	L	D	W	P	V	N	P	D	S	I	I	N
Query Conservation
Alig confidence																	.
Template Conservation																	.
Template Sequence		K	E	Y	N	F	A	N	F	I	T	N	A	F	G	Q	.	F	D	N	Y	T	P	M	Q	L	A	Q	Y	V	A	T	I	A	N	N	G	V	R	L	A	P	H	I	V	E	G	I	Y	D	N	N	D	K	G	G	L	G	E	L	I	Q	A	I	D	T	K	E	I	N	K	V	N	I	S	E	S	D	M	A	I
Template Known Secondary structure		S	S										T	T	T	S	.	S	S	B	B														T	T	T						B	S									T	T	S	S																	S	S
Template Predicted Secondary structure																	.
Template SS confidence
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
		302	.	.	.	.	.	.			.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.			.	.	.	350	.	.	.	.	.	.	.			.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure									.	.																																							.	.												.	.
Query SS confidence									.	.																																							.	.												.	.
Query Sequence		G	S	D	N	K	I	A	.	.	L	A	A	R	P	V	K	A	I	T	P	P	T	P	A	V	R	A	S	W	V	H	K	T	G	A	T	G	G	F	G	S	Y	V	A	F	I	P	.	.	E	K	E	L	G	I	V	M	L	A	N	.	.	K	N	Y	P	N	P	A	R	V	D	A	A	W	Q	I	L	N	A
Query Conservation									.	.																																							.	.												.	.
Alig confidence									.	.																												.	.	.									.	.												.	.
Template Conservation																																						.	.	.
Template Sequence		L	H	Q	G	F	Y	Q	V	S	H	G	T	S	P	L	T	T	G	R	A	F	S	D	G	A	T	V	S	I	S	G	K	T	G	T	N	.	.	.	T	N	A	V	A	Y	A	P	T	E	N	P	Q	I	A	V	A	V	V	F	P	H	N	T	N	L	T	K	N	V	G	P	A	I	A	R	D	I	I	N	L
Template Known Secondary structure														S	T	T				G	G	G	T	T	T		S	S										.	.	.								S	T	T	S										T	T				S	S
Template Predicted Secondary structure																																						.	.	.
Template SS confidence
		584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.				620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660
		376
Predicted Secondary structure
Query SS confidence
Query Sequence		L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		673

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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