Job Description P00811 Confidence 100.00% Date Thu Jan 5 10:56:54 GMT 2012 Rank 7 Aligned Residues 319 % Identity 24% Template c2qmiH_ PDB info PDB header:hydrolase Chain: H: PDB Molecule:pbp related beta-lactamase; PDBTitle: structure of the octameric penicillin-binding protein2 homologue from pyrococcus abyssi Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		D	I	V	H	R	T	I	T	P	L	I	E	Q	Q	K	I	P	G	M	A	V	A	V	I	Y	Q	G	K	P	Y	Y	.	F	T	W	G	Y	A	D	I	A	K	K	Q	P	V	T	Q	Q	T	L	F	E	L	G	S	V	S	K	T	F	T	G	V	L	G	G	D	A	I	A	R	G	E	I	K	L	S	D	P
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence		G	K	L	E	S	F	I	V	E	K	M	A	E	R	K	V	P	G	I	S	I	S	I	I	K	D	G	D	V	V	Y	A	K	G	F	G	Y	R	N	V	E	A	R	L	P	S	T	P	E	T	I	Y	G	I	G	S	I	T	K	S	F	T	A	L	A	I	M	K	L	V	E	E	G	G	L	S	L	D	D	P
Template Known Secondary structure															T	T											T	T													T	T	T	T					T	T		B				G	G	G															T	T	S			T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.																.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	T	K	Y	W	P	E	L	T	A	K	Q	W	N	G	I	T	L	L	H	L	A	T	Y	T	A	G	G	L	P	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	D	E	V	K	S	S	S	D	L	L	R	F	Y	Q	N	W	Q	P	A	W	A	P	G	T	Q	R	L	Y	A	N	S
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	E	K	F	V	N	I	K	L	R	P	F	G	E	P	V	T	V	H	H	L	L	T	H	S	S	G	I	P	S	L	G	Y	A	E	A	F	I	D	G	M	V	G	G	D	N	W	L	P	V	S	T	P	E	E	T	I	A	F	A	R	D	M	E	K	W	A	V	A	K	P	G	E	R	F	F	Y	L	N	T
Template Known Secondary structure		G	G	G	T	S	S	S				G	G	G				B						T	T		S	S														T	T	T		S							S								G	G	G	G	G	G	G			S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220				.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																															.							.	.	.
Query SS confidence																																															.							.	.	.
Query Sequence		S	I	G	L	F	G	A	L	A	V	K	P	S	G	L	S	F	E	Q	A	M	Q	T	R	V	F	Q	P	L	K	L	N	H	T	W	I	N	V	P	P	A	E	E	K	N	.	Y	A	W	G	Y	R	.	.	.	E	G	K	A	V	H	V	S	P	G	A	L	D	A	E	A	Y	G	V	K	S	T	I	E	D
Query Conservation																																															.							.	.	.
Alig confidence																																															.							.	.	.
Template Conservation
Template Sequence		G	Y	V	L	L	G	K	I	I	E	K	V	S	G	V	S	Y	E	E	Y	I	K	K	K	I	L	E	P	L	G	M	N	R	S	Y	F	F	K	E	E	V	E	K	D	K	D	V	A	M	G	Y	I	L	D	K	E	G	R	L	V	P	Q	P	F	P	Y	G	I	T	A	D	G	G	L	L	S	S	V	L	D
Template Known Secondary structure															S	S										T	T	G	G	G	T		T	T		B							T	T	S	S	S	B								T	T	S									T	T			T	T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure														.	.																										.
Query SS confidence														.	.																										.
Query Sequence		M	A	R	W	V	Q	S	N	L	K	P	L	.	.	D	I	N	E	K	T	L	Q	Q	G	I	Q	L	A	Q	S	R	Y	W	Q	T	G	D	M	Y	.	Q	G	L	G	W	E	M	L	D	W	P	V	N	P	D	S	I	I	N	G	S	D	N	K	I	A	L	A	A	R	P	V	K	A	I	T	P	P	T	P
Query Conservation														.	.																										.
Alig confidence														.	.																										.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	K	Y	L	K	M	Y	I	E	R	D	E	S	I	V	S	K	E	Y	I	E	K	M	E	T	S	Y	I	K	V	P	W	E	I	F	G	G	E	G	Y	G	Y	G	L	I	I	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N
Template Known Secondary structure											T	T			S	S	S									T	S						S			S	S	S						S	S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.																															.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	R	A	S	W	V	H	K	T	G	A	T	G	G	F	G	S	Y	V	A	F	I	P	E	K	E	L	G	I	V	M	L	A	N	K	N	Y	P	N	P	A	R	V	D	A	A	W	Q	I	L	N	A	L
Query Conservation
Alig confidence																																														.	.
Template Conservation																																														.	.
Template Sequence		F	L	G	E	K	L	V	G	H	S	G	S	V	G	M	Y	T	G	Y	I	G	Y	I	P	E	K	K	I	G	V	A	V	L	E	N	S	S	G	Y	P	P	S	Y	I	.	.	A	M	Y	A	L	A	L	L
Template Known Secondary structure			T	T											S	S									G	G	G	T								S	S	S	S	S						.	.
Template Predicted Secondary structure																																														.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions