Job Description P00811 Confidence 97.83% Date Thu Jan 5 10:56:54 GMT 2012 Rank 65 Aligned Residues 300 % Identity 16% Template c1pmdA_ PDB info PDB header:peptidoglycan synthesis Chain: A: PDB Molecule:peptidoglycan synthesis multifunctional enzyme; PDBTitle: penicillin-binding protein 2x (pbp-2x) Resolution 3.50 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.											.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.									.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.									.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	I	N	D	I	V	H	R	T	I	T	P	L	I	E	Q	Q	K	I	P	G	M	A	V	A	V	I	Y	.	.	Q	G	K	P	Y	Y	F	T	.	.	.	.	.	.	.	.	.	.	W	G	Y	A	D	I	A	K	K	Q	P	V	T	Q	Q	T	L	F	E	L	G	S	V	S	K	T	F	T	G	V	L
Query Conservation																															.	.									.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.									.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	P	L	Q	S	F	M	E	T	Q	M	D	A	F	Q	E	K	V	K	G	K	Y	M	T	A	T	L	V	S	A	K	T	G	E	I	L	A	T	T	Q	R	P	T	F	D	A	D	T	K	E	G	I	T	E	D	F	V	W	R	D	I	L	Y	Q	S	N	Y	E	P	G	S	T	M	K	V	M	M	L	A	A
Template Known Secondary structure																			S												S	S	S		B							S	S				T	T	T	T		S	S	S	S							T	T	T	S							S	T	T
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.													.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	D	A	I	A	R	G	E	I	K	L	S	D	P	T	.	.	.	.	.	.	.	.	.	.	.	.	T	K	Y	W	P	E	L	T	A	K	Q	W	N	G	I	T	L	L	H	L	A	T	Y	T	A	G	G	L	P	L	Q	V	P	D	E	V	K	S	S	S	D	L	L	R	F	Y	Q	N	W	Q	P	A
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.														.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	A	I	D	N	N	T	F	P	G	G	E	V	F	N	S	S	E	L	K	I	A	D	A	T	I	R	D	W	D	V	N	E	G	L	T	G	G	R	M	M	T	F	S	Q	G	F	A	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.					T				S	S						S				T	T	T	S					G	G	G	G	T			S	S						S						T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		W	A	P	G	T	Q	R	L	Y	A	N	S	S	I	G	L	F	G	A	L	A	V	K	P	S	G	L	S	F	E	Q	A	M	Q	T	R	V	F	Q	P	L	K	L	.	N	H	T	W	I	N	V	P	P	A	E	E	K	N	Y	A	W	G	Y	R	E	G	K	A	V	H	V	S	P	G	A	L	D	A	E	A
Query Conservation																																													.
Alig confidence		.	.	.	.	.	.	.	.	.										.	.	.															.	.	.	.	.				.																.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.										.	.	.															.	.	.	.	.																				.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	S	N	V	G	M	T	L	L	E	.	.	.	Q	K	M	G	D	A	T	W	L	D	Y	L	N	R	.	.	.	.	.	F	K	F	G	V	P	T	R	F	G	L	T	D	E	Y	A	G	Q	L	.	.	.	.	.	.	.	P	A	D	N	I	V	N	I	A	Q	S	S	F	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.						T				.	.	.		T	T		T	T									.	.	.	.	.	T	T	T	T	S					S	S	S								.	.	.	.	.	.	.			S									T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.										.	.	.															.	.	.	.	.																				.	.	.	.	.	.	.
Template SS confidence
											396	.	.	.	400	.	.	.	.				.	.	.	.	.	410	.	.	.	.	.	.	.	.						.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.								.	.	440	.	.	.	.	.	.	.	.	.	450	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	V	K	S	T	I	E	D	M	A	R	W	V	Q	S	N	L	K	P	L	D	I	N	E	K	T	L	Q	Q	G	I	Q	L	A	Q	S	R	Y	W	Q	T	G	D	M	Y	Q	G	L	G	W	E	M	L	D	W	P	V	N	P	D	S	I	I	N	G	S	D	N	K	I	A	L	A	A	R	P	V	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	G	I	S	V	T	Q	T	Q	M	I	R	A	F	T	A	I	A	N	D	G	V	M	L	E	P	K	F	I	S	A	I	Y	D	P	N	D	Q	T	A	R	K	S	Q	K	E	I	V	G	N	P	V	S	K	D	A	A	S	L	T	R	T	N	M	V	L	V	G	T	D	P	V	Y	G	T	M	Y	N	H	S
Template Known Secondary structure		S	S																T	T	T	T						B								S	S	S	S														S														T	T	S	S		S	S	S		S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
		317	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.								.	.	.	.	.									.	340	.	.	.	.	.	.	.	.	.				350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure						.														.	.	.	.	.	.	.						.	.	.	.	.	.	.	.												.	.	.									.
Query SS confidence						.														.	.	.	.	.	.	.						.	.	.	.	.	.	.	.												.	.	.									.
Query Sequence		I	T	P	P	.	T	P	A	V	R	A	S	W	V	H	K	T	G	.	.	.	.	.	.	.	A	T	G	G	F	.	.	.	.	.	.	.	.	G	S	Y	V	A	F	I	P	E	K	E	.	.	.	L	G	I	V	M	L	A	N	.	K	N	Y	P	N	P	A	R	V	D	A	A	W	Q	I	L	N	A	L
Query Conservation						.														.	.	.	.	.	.	.						.	.	.	.	.	.	.	.												.	.	.									.
Alig confidence						.														.	.	.	.	.	.	.						.	.	.	.	.	.	.	.												.	.	.									.
Template Conservation
Template Sequence		T	G	K	P	T	V	T	V	P	G	Q	N	V	A	L	K	S	G	T	A	Q	I	A	D	E	K	N	G	G	Y	L	V	G	L	T	D	Y	I	F	S	A	V	S	M	S	P	A	E	N	P	D	F	I	L	Y	V	T	V	Q	Q	P	E	H	Y	S	G	I	Q	L	G	E	F	A	N	P	I	L	E	R	A
Template Known Secondary structure		S	S	S		S	S		B	T	T	B															S	S	S	S	S			S	T	T										S	S	S	S	S		S											S	S
Template Predicted Secondary structure
Template SS confidence
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions