Job Description P0AAF6 Confidence 100.00% Date Wed Jan 25 15:20:21 GMT 2012 Rank 22 Aligned Residues 224 % Identity 27% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		2	.	.	.	.	.	.	.	10	.	.				.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		S	I	Q	L	N	G	I	N	C	F	Y	.	.	.	G	A	H	Q	A	L	F	D	I	T	L	D	C	P	Q	G	E	T	L	V	L	L	G	P	S	G	A	G	K	S	S	L	L	R	V	L	N	L	L	E	M	P	R	S	G	T	L	N	I	A	G	N	H	F	D	F	T	K	T	P	S	D	K	A	I	R
Query Conservation													.	.	.
Alig confidence													.	.	.																																																							.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.
Template Sequence		N	V	Q	F	S	G	V	V	F	N	Y	P	T	R	P	S	I	P	V	L	Q	G	L	S	L	E	V	K	K	G	Q	T	L	A	L	V	G	S	S	G	C	G	K	S	T	V	V	Q	L	L	E	R	F	Y	D	P	M	A	G	S	V	F	L	D	G	K	E	I	.	.	.	.	.	.	K	Q	L	N	V	Q
Template Known Secondary structure													S		G	G	G			S			S							S	S	S							S	S	S	T	T									T	T	S	S			S						S	S	S	S		B	.	.	.	.	.	.	T	S	S
Template Predicted Secondary structure																																																																						.	.	.	.	.	.
Template SS confidence
		1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.							.	.	1100	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140												.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	R	R	N	V	G	M	V	F	Q	Q	Y	N	L	W	P	H	L	T	V	Q	Q	N	L	I	E	A	P	C	R	V	L	G	L	S	K	D	Q	A	L	A	R	A	E	K	L	L	E	R	L	R	L	K	P	Y	S	D	R	Y	P	L	.	.	.	.	.	.	.	.	.	.	.	H	L	S	G	G	Q	Q
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.										.											.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.										.											.	.	.	.
Template Sequence		W	L	R	A	Q	L	G	I	V	S	Q	E	P	I	L	F	D	C	.	S	I	A	E	N	I	A	Y	G	.	D	N	S	R	V	V	S	Y	E	E	.	.	.	.	I	V	R	A	A	K	E	A	N	I	H	Q	F	I	D	S	L	P	D	K	Y	N	T	R	V	G	D	K	G	T	Q	L	S	G	G	Q	K
Template Known Secondary structure				T	T	S						S	S					S	S	.	B						T			.		S	S								.	.	.	.									T						S	S	T	T	T	G	G	G		B		S	T	T	S		S	S
Template Predicted Secondary structure																				.										.											.	.	.	.
Template SS confidence
		1104	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.		.	.	.	.	.	.	.	.	1130		.	.	.	.	.	.	.	.	.	1140					.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	V	A	I	A	R	A	L	M	M	E	P	Q	V	L	L	F	D	E	P	T	A	A	L	D	P	E	I	T	A	Q	I	V	S	I	I	R	E	L	A	E	T	N	I	T	Q	V	I	V	T	H	E	V	E	V	A	R	K	T	A	S	R	V	V	Y	M	E	N	G	H	I	V	E	Q	G	D	A	S	C
Query Conservation
Alig confidence																																											.																	.
Template Conservation																																											.																	.
Template Sequence		Q	R	I	A	I	A	R	A	L	V	R	Q	P	H	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	K	V	V	Q	E	A	L	D	K	A	R	.	E	G	R	T	C	I	V	I	A	H	R	L	S	T	I	Q	.	N	A	D	L	I	V	V	I	Q	N	G	K	V	K	E	H	G	T	H	Q	Q
Template Known Secondary structure															S	S					S		S	S	S																	S	.	S	S	S							S		T	T	G	G	G	.	S		S							T	B
Template Predicted Secondary structure																																											.																	.
Template SS confidence
		1178	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.		.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.		.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	E	P	Q	T	E	A	F	K	N	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	A	Q	K	G	I	Y	F	S	M	V
Template Known Secondary structure					S		S
Template Predicted Secondary structure
Template SS confidence
		1256	.	.	.	1260	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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