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Job DescriptionP0AAF6
Confidence97.87%DateWed Jan 25 15:20:21 GMT 2012
Rank118Aligned Residues214
% Identity12%Templatec3cmvG_
PDB info PDB header:recombinationChain: G: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures
Resolution4.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.........70.........80.........
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Query Sequence  ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFTKTPSDKAIRDLRRNVGMVFQ. . . . . . . . . . .
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Template Sequence  GAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA
Template Known Secondary structure  SSSSTTS
STTSSTTT


SS



T

GGG


S
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   1052.......1060.........1070.........1080.........1090.........1100.........1110.........1120.........1130.
 
   90.........100.........110.........120..... ....130.... .....140...
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Query Sequence  . . . . . QYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKL. . . . . . . . . . . . . . . . . . . . LERLRLKPY. SDRYPLHLS
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Template Sequence  LARSGAVDVIVVDSV. . AALTPKAEIEGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKE
Template Known Secondary structure  TTSS


G..GG





TTTTT



TT
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   1132.......1140...... ...1150.........1160.........1170.........1180.........1190.........1200.........
 
   144.....150.........160 .........170.........180.........190.........200.........210... ..
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Query Sequence  GGQQQRVAIARALMMEP. . QVLLFDEPTAALDPEITAQIVSIIRELAETNITQVIVTHEVEVARKTASRVVY. . . . . . ME
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Template Sequence  GENVVGSETRVKVVKNKIAAPFKQAEFQI. LYGEGINFYGELVDLGVKEK. . . . LIEKAGAWY. SYKGEKIGQGKANATA
Template Known Secondary structure  TT
SSS
TT
.TTT
TT....SSTT.TT
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   1234.....1240.........1250.........1260.. .......1270.........1280.. .......1290. ........1300.......
 
   216...220.........230.........240..
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Query Sequence  NGHIVEQGDASCFTEPQTEAFKNYLSH
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Template Sequence  WLKDNPETAKEIEKKVRELLLKQKALA
Template Known Secondary structure  TTS


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   1308.1310.........1320.........1330....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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