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Job DescriptionP0AAF6
Confidence100.00%DateWed Jan 25 15:20:21 GMT 2012
Rank2Aligned Residues233
% Identity36%Templatec2it1B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin PDBTitle: structure of ph0203 protein from pyrococcus horikoshii
Resolution1.94 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFTKTPSDKAIRDL
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Template Sequence  VEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK. . . . . . . .
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TT
TT


TTSSTSS

STT
TTS
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   2.......10.........20.........30.........40.........50.........60.........70...
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEP
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Template Sequence  DRNVGLVFQNWALYPHMTVYKNI. AFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEP
Template Known Secondary structure  T
TT



TTS
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TT
GGGTTS
GGGS
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   74.....80.........90...... ...100.........110.........120.........130.........140.........150..
 
   161........170.........180.........190 .........200.........210.........220......... 230........
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Query Sequence  QVLLFDEPTAALDPEITAQIVSIIRELAET. NITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT. EPQTEAFKN
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Template Sequence  EVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGG
Template Known Secondary structure  SSGGGGS
T
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   153......160.........170.........180.........190.........200.........210.........220.........230..
 
   239240..
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Query Sequence  YLSH
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Template Sequence  FLGN
Template Known Secondary structure  SBT
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   233...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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