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Job DescriptionP0AAF6
Confidence100.00%DateWed Jan 25 15:20:21 GMT 2012
Rank11Aligned Residues230
% Identity37%Templatec1q1bD_
PDB info PDB header:transport proteinChain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk; PDBTitle: crystal structure of e. coli malk in the nucleotide-free form
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFTKTPSDKAIRDLRR
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Template Sequence  VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA. . . . . . . . ER
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TT

TT

SGGGSTTTSS


SSTT
TT

SS........TT
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   4.....10.........20.........30.........40.........50.........60.........70... ..
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  NVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEPQV
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Template Sequence  GVGMVFQSYALYPHLSVAENMSFG. LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV
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B
S




TTS
TTTT.TTSSSSTTTTTTTTTGGGT
TT
SS



GGGTTTSSSSTTTT

S
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   76...80.........90......... 100.........110.........120.........130.........140.........150....
 
   163......170.........180....... ..190.........200.........210.........220........ .230.........240
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Query Sequence  LLFDEPTAALDPEITAQIVSIIREL. AETNITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF. TEPQTEAFKNYL
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Template Sequence  FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFI
Template Known Secondary structure 
BSSTTTT

TTTTT

S

STT
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   155....160.........170.........180.........190.........200.........210.........220.........230....
 
   241
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Query Sequence  S
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Template Conservation 
Template Sequence  G
Template Known Secondary structure  S
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Template SS confidence 
   235
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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