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Job DescriptionP77374
Confidence100.00%DateThu Jan 5 12:28:16 GMT 2012
Rank17Aligned Residues604
% Identity30%Templated1y5ia2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   47..50.........60.........70.........80..... ....90.........100.........110........
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Query Sequence  AREKVVWGACSVNCGSRCALRLHVKDNEVTWVETDNTGS. . . DEYGNHQVRACLRGRSIRRRINHPDRLNYPMKR. . . . .
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Template Sequence  QHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPMMRKRLMK
Template Known Secondary structure 

S


SSSS



TT


S



TTS


TT


TGGGGGTSTTB

S
Template Predicted Secondary structure 


















































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   40.........50.........60.........70.........80.........90.........100.........110.........
 
   119120.........130.........140.........150.........160.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VGKRGEGKFERISWDEALDTIASSLKKTVEQYGNEAVYIQYSSGIVGGNMT
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Template Sequence  MWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKNYGPDRVAGFSPIP. . . . . . A
Template Known Secondary structure  TT
SST
TTTTSS


T
GGG


G......G
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   120.........130.........140.........150.........160.........170.........180.........190.. .
 
   170.........180.........190.........200......... 210.........220.........230.........240........
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Query Sequence  RSSPSASAVKRLMNCYGGSLNQYGSYSTAQISCAMPYTYG. SNDGNSTTDIENSKLVVMFGNNPAETRMSGGGITYLLEK
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Template Sequence  MSMVSYASGARYLSLIGGTCLSFYD. WYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTE. . .
Template Known Secondary structure  GST


TT.TTT
S
TS
S




TT
SS

SGGG...
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   194.....200.........210........ .220.........230.........240.........250.........260.........
 
   249250.........260.........270.........280.........290.........300.. .......310.
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Query Sequence  AREKSNAKMIVIDPRYTDTAAGREDEWLPIRPGTDAALVAGIAWVLINENLVDQ. . . . . . PFLDKYCVG. . . . . . . . . . .
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Template Sequence  . VRYKGTKTVAVTPDYAEIAK. LCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRYTDMPMLVMLEERDG
Template Known Secondary structure  .GGGT

SS

.TSS


TT
TTTS

BSTTB
SS
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   270.........280......... 290.........300.........310.........320.........330.........340.......
 
  
Predicted Secondary structure  ................................................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation      
  

 

               

 
  
    
 
  
        
                           
Template Sequence  YYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKWNLEQRDGKTGEETELQLSLLGSQDEIA
Template Known Secondary structure  S
BGGGBTTGGG

SSGGG
B
BTTS

BTTSGGGTSSS
S

S
SSBBTTT

B

B



TTS
S
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   348.350.........360.........370.........380.........390.........400.........410.........420.......
 
   312.......320.........330....... ..340......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . YDEKTLPADAPKNGHYKAYILGEGDD. . . . . . . . . . . . . . . . . . KTAKTPQWA
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Template Sequence  EVGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTPAWA
Template Known Secondary structure 

TT


TTS





SBTTS
TTB

SS

TTSBSSTTS

TT
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   428.430.........440.........450.........460.........470.........480.........490.........500.......
 
   347..350.........360..... ....370.........380.........390.........400.........410.........
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Query Sequence  SQITGIPEDRIIKLAREIG. . . . . TAKPAYICQGWGPQRQANGELTARAIAMLPILTGNVGISGGNSGARESTYTITI. .
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Template Sequence  EQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQT
Template Known Secondary structure 


TS

TSTTTT
TTSTT

SS



SS
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   508.510.........520.........530.........540.........550.........560.........570.........580.......
 
   420.........430.........440.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ERLPVLDNPVKTSISCFSWTDAIDHGPQ. . . . . . . . . . . .
Query Conservation  ........................................                            ............
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Template Conservation 
      
 
         
                       
                     

 
  
        
Template Sequence  GWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPLT
Template Known Secondary structure  TTTT
S


TTGGGG



SGGGS
TTS
GGGS
S
TTSS

SS
BSS
TTS
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   588.590.........600.........610.........620.........630.........640.........650.........660.......
 
   448.450.........460.........470.........480.........490
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . MTAIRDGVRGKDKLDVPIKFIWNYAGNTLVNQHSDINKTHEIL. . . . . . . . . . . . . . . .
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Template Sequence  IAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQGKDLGQQG
Template Known Secondary structure  TTS
TSS
BGGG
TTSSSSS

S

TTTTT
SSTT
S




S

TTTTT
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   668.670.........680.........690.........700.........710.........720.........730.........740.......
 
   491........500.........510.........520.........530.........540.........550........
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Query Sequence  . . . . . . . . . . . . QDESKCEMIVVIENFMTSSAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFLQPVTSEKFERKPIYW
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Template Sequence  GVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDM. . . NTSDMHPFIHPLSAAVDPAWEAKSDWE
Template Known Secondary structure 



SSS


SS





SSB

T
SB

TTSS
...

SSSS

SS

STT
B
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   748.750.........760.........770.........780.........790....... ..800.........810.........820....
 
   559560........
Predicted Secondary structure 
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Query Sequence  ILSEVAKRLG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  IYKAIAKKFSEVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERDYPATYERFTSIGP
Template Known Secondary structure  TTTT




TTSGGG


SSS


GGGTSS


BTTTB
GGGTB

T
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   825....830.........840.........850.........860.........870.........880.........890.........900....
 
   569570.........580.........590....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PDVYQKFTEGRTQEQWLQHLYAKMLA. . . . . . . . . . . . . . . . . . . .
Query Conservation  ..................................                          ....................
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Template Conservation                        
                            
                      
     
Template Sequence  LMEKIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAWAALSEFTGRDHTH
Template Known Secondary structure  T
TT


B

SSTTTTSBB

S
TTTBSS

GG
Template Predicted Secondary structure 
















































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   905....910.........920.........930.........940.........950.........960.........970.........980....
 
   595....600.........610....... ..620.........630.........640..... ....650.........660..
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Query Sequence  . . . . KDPALPSYDELKKMGIYKRKDPN. . . . . . GHFVAYKAFRDDPEANPLKTPSGKIEIY. . SSRLAEIARTWELEKDE
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Template Sequence  LALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQQLYQDHQWMRDFGE. . . . . . . .
Template Known Secondary structure  GTGGGTT
B

S




TTSSS


SSS


TT



SSTTSSB




STT
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   985....990.........1000.........1010.........1020.........1030.........1040.........1050......
 
   663......670......
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Query Sequence  VISPLPVYASTFEG
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Template Conservation  ... 
         
Template Sequence  . . . SLLVYRPPIDT
Template Known Secondary structure  ...SS








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   1057..1060.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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