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Job DescriptionP77374
Confidence100.00%DateThu Jan 5 12:28:16 GMT 2012
Rank21Aligned Residues608
% Identity23%Templated1vlfm2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4950.........60.........70.........80... ......90.........100.........110....
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Query Sequence  EKVVWGACSVNCGSRCALRLHVKDNEVTWVETDNT. . . . . . . . . . . . . . GSDEYGNHQVRACLRGRSIRRRINHPDRLNY
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Template Sequence  GEVVRLT. . . NSSTGGPVFVYVKDGKIIRMTPMDFDDAVDAPSWKIEARGKTFTPPRKTSIAPYTAGFKSMIYSDLRIPY
Template Known Secondary structure 


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TT

TT

B

TTTS




TT


SB



TTT
TTB

S
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   2...... .10.........20.........30.........40.........50.........60.........70........
 
   115....120...... ...130.........140.........150.........160.........170......
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Query Sequence  PMKRVGKRGEGK. . . . . . . . . . . . . . . . . . FERISWDEALDTIASSLKKTVEQYGNEAVYIQYSSGIVGGNMTRSSPSAS
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Template Sequence  PMKRKSFDPNGERNPQLRGAGLSKQDPWSDYERISWDEATDIVVAEINRIKHAYGPSAILSTPSSHHMW. . . GNVGYRHS
Template Known Secondary structure 
TT

TTS


GGGTTTT
GGGG

T
GGG

S


S...
TTTSTTT
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   7980.........90.........100.........110.........120.........130.........140....... ..150.....
 
   177..180.........190.........200.........210..... ....220.........230.........240 .......
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Query Sequence  AVKRLMNCYGGSLNQYGSYSTAQISCAMPYTYGSNDGNS. . . . . . . . TTDIENSKLVVMFGNNPAETRMSGG. GITYLLE
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Template Sequence  TYFRFMNMMGFTYADHNPDSWEGWHWGGMHMWGFSWRLGNPEQYDLLEDGLKHAEMIVFWSSDPETNSGIYAGFESNIRR
Template Known Secondary structure 




TTTT

GGGTT



TT
SS


SSS
TTTT
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   156...160.........170.........180.........190.........200.........210.........220.........230.....
 
   248.250.........260.........270.........280.........290.........300.........310.........320.......
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Query Sequence  KAREKSNAKMIVIDPRYTDTAAGREDEWLPIRPGTDAALVAGIAWVLINENLVDQPFLDKYCVGYDEKTLPADAPKNGHY
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Template Sequence  QWLKDLGVDFVFIDPHMNHTARLVADKWFSPKIGTDHALSFAIAYTWLKEDSYDKEYVAANAHGFEEWAD. . . . . . . . . .
Template Known Secondary structure  TT

SS


S


TT
T
S
S..........
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   236...240.........250.........260.........270.........280.........290.........300.....
 
   328.330.........340.........350.........360.........370...... ...380.........390.........400...
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Query Sequence  KAYILGEGDDKTAKTPQWASQITGIPEDRIIKLAREIGTAKPAYICQGW. . . . GPQRQANGELTARAIAMLPILTGNVGI
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Template Sequence  . . . YVLGKTDGTPKTCEWAEEESGVPACEIRALARQWAKKNTYLAAGGLGGWGGACRASHGIEWARGMIALATMQG. MGK
Template Known Secondary structure  ...TTTTTS






S
TTTTS

GGGSSTTTT.TTS
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   306...310.........320.........330.........340.........350.........360.........370........ .380.
 
   404.....410.........420. ........430......
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Query Sequence  SGGNSGARESTYTITIER. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LPVLDNPVKTSISCF
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Template Sequence  PGSNMWSTTQGVPLDYEFYFPGYAEGGISGDCENSAAGFKFAWRMFDGKTTFPSPSNLNTSAGQHIPRLKIPECIMGGKF
Template Known Secondary structure  TT


SSS




TTS



GGG
TTS

TTTSGGGTT

SSS





SSSSTTS
GGGS
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   382.......390.........400.........410.........420.........430.........440.........450.........460.
 
   437..440.........450.........460.........470.........480.........490.........500.........510......
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Query Sequence  SWTDAIDHGPQMTAIRDGVRGKDKLDVPIKFIWNYAGNTLVNQHSDINKTHEILQDESKCEMIVVIENFMTSSAKYADIL
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Template Sequence  QWSGKGFAGGDISHQLHQYEYPAPGYSKIKMFWKYGGPHLGT. MTATNRYAKMYTH. DSLEFVVSQSIWFEGEVPFADII
Template Known Secondary structure 

SS

SSTTGGG
S
TT




S

.SSSTTT
.TT

SBS
TTGGG
S
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   462.......470.........480.........490.........500... ......510...... ...520.........530.........
 
   517..520........ .530.........540.........550.........560.........570.........580......
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Query Sequence  LPDLMTVEQEDI. . . . . . . . . . IPNDYAGNMGYLIFLQPVTSEKFERKPIYWILSEVAKRLGPDVYQKFTEGRTQEQWLQ
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Template Sequence  LPACTNFERWDISEFANCSGYIPDNYQLCNHRVISLQAKCIEPVGESMSDYEIYRLFAKKLNIEEMFS. . EGKDELAWCE
Template Known Secondary structure  B

GGGS
TT

BTTBTTGGGGSSS



S

STT
B
TT
..TT

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   540.........550.........560.........570.........580.........590.........600....... ..610.......
 
   587..590.........600.........610.........620.. .......630.........640.........
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Query Sequence  HLYAKMLAKDPALPSYDELKKMGIYKRKDPNGHFVA. . . . . . . . . . . . . . . . . YKAFRDDPEANPLKTPSGKIEIYSSRL
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Template Sequence  QYFNAT. . DMPKYMTWDEFFKKGYFVVPDNPNRKKTVALRWFAEGREKDTPDWGPRLNNQVCRKGLQTTTGKVEFIATSL
Template Known Secondary structure  TS..SGGGT






TTS



TTTTS


SS
S
S
GGGSBTTBS
SSTTSSSB
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   618.620... ......630.........640.........650.........660.........670.........680.........690.....
 
   650.........660.........670.........680.........
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Query Sequence  AEIARTWELEKDEVISPLPVYASTFEGWNSPERRTFPLQL
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Template Sequence  KNFEEQGYID. . EHRPSMHTYVPAWESQ. . . . . KHSPLAV
Template Known Secondary structure  TT


..TTS
SB





TTST.....TT
GGG
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   696...700..... ....710.........720. .......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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