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Job DescriptionP77374
Confidence100.00%DateThu Jan 5 12:28:16 GMT 2012
Rank16Aligned Residues640
% Identity22%Templated1kqfa2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   47..50.........60.........70 .........80.........90.........100.........110.........
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Query Sequence  AREKVVWGACSVNCGSRCALRLHV. . . . . . . KDNEVTWVETDNTGSDEYGNHQVRACLRGRSIRRRINHPDRLNYPMKRV
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Template Sequence  LRAKEIRNTCTY. CSVGCGLLMYSLGDGAKNAREAIYHIEGD. . . . PDHPVSRGALCPKGAGLLDYVNSENRLRYPEYRA
Template Known Secondary structure  TTS
SS.BTT

S
S
TTS


....TT
TTTTT


TTT
TTB

S

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   41........50.. .......60.........70.........80. ........90.........100.........110.....
 
   120.........130.........140.........150.. .......160.........170.........180.......
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Query Sequence  GKRGEGKFERISWDEALDTIASSLKKTVEQYGN. . . . . . . . . . . . EAVYIQYSSGIVGGNMTRSSPSASAVKRLMNCYGG
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Template Sequence  . . PGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCAS. . . . . . . GASNETGMLTQKFARSLGM
Template Known Secondary structure  ..TT
SS




TTS
B
S

T.......TS
TTB
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   116...120.........130.........140.........150.........160....... ..170.........180......
 
   188.190.........200......... 210.........220.........230.........240.........250.........260......
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Query Sequence  SLNQYGSYSTAQISCAMPYTYG. SNDGNSTTDIENSKLVVMFGNNPAETRMSGGGITYLLEKAREKSNAKMIVIDPRYTD
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Template Sequence  LAVDNQARVHGPTVASLAPTFGRGAMTNHWVDIKNANVVMVMGGNAAEAHPVG. . . FRWAMEAKNNNDATLIVVDPRFTR
Template Known Secondary structure 


GGG

S

S
SS
TGGGGG
SS

STTT...TS


SS

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   187..190.........200.........210.........220.........230......... 240.........250.........260...
 
   267..270.........280.........290.........300......... 310.........320....
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Query Sequence  TAAGREDEWLPIRPGTDAALVAGIAWVLINENLVDQPFLDKYC. . . . . . . . . . . . . . . . . VGYDEKTLPADAPKN. . . . .
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Template Sequence  TAS. VADIYAPIRSGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYDKSSWNYQLD
Template Known Secondary structure  .T
S


TT
TT
S
BSTTBBB
TT

TTTTTTTT

TTSSB
B
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   265.. ..270.........280.........290.........300.........310.........320.........330.........340...
 
   325....330.........340.........350.........360....... ..370.........380.........
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Query Sequence  . . . . . . . . . . . GHYKAYILGEGDDKTAKTPQWASQITGIPEDRIIKLAREIGTA. . . . KPAYICQGWGPQRQANGELTAR
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Template Sequence  ENGYAKRDETLTHPRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCEVLASTSAPDRTTTFLYALGWTQHTVGAQNIR
Template Known Secondary structure  TTSSB
B
TTS
STTBTT




GGGSTT

SSSTT
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   344.....350.........360.........370.........380.........390.........400.........410.........420...
 
   390.........400.........410.........420.........430...
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Query Sequence  AIAMLPILTGNVGISGGNSGARESTYTITIERLPVLDNPVKTSI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TMAMIQLLLGNMGMAGGGVNALRGHSNIQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPK
Template Known Secondary structure  T
TT
TT
S


BTTTT
STTGGG

BTT

SS


SSSS


GGGG
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   424.....430.........440.........450.........460.........470.........480.........490.........500...
 
   434.....440.........450.........460.........470.........480.........490.........
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Query Sequence  . . . . . . . . . . . . . . SCFSWTDAIDHGPQMTAIRDGVRGKDKLDVPIKFIWNYAGNTLVNQHSDINKTHEILQDESKCEMI
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Template Sequence  FFVSLMKSFYGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVAS. FPDKNKVVSCL. . . SKLKYM
Template Known Secondary structure  GGG

GGGGGGGGGS

BSS


TT


S

.SSS...TT
S
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   504.....510.........520.........530.........540.........550.........560.. .......570... ......
 
   500.........510... ......520.........530.........540.........550.........560..
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Query Sequence  VVIENFMTSSAKYA. . . . . . . . . . . . . . . . . DILLPDLMTVEQEDIIPNDYAGNMGYLIFLQPVTSEKFERKPIYWILSE
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Template Sequence  VVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEED. . . . GSIANSGRWLQWHWKGQDAPGEARNDGEILAG
Template Known Secondary structure  SB

TTTTTTS

GGGG


GGG


B

GGGS
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TT



S

STT
B
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   580.........590.........600.........610.........620... ......630.........640.........650.....
 
   563..... .570.........580.........590.........600.........610.........620......
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Query Sequence  VAKRLG. . . . . . . . . . . . . . . . PDVYQKFTEGRTQEQWLQHLYAKMLAKDPALPSYDELKKMGIYKRKDPNGHFVAYKAF
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Template Sequence  IYHHLRELYQSEGGKGVEPLMKMSWNYKQPHEPQSDEVAKEN. . . . . . . . . NGYALEDLYDANGVLIAKKGQLLSSFAHL
Template Known Secondary structure 

SSS



SSTTS

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SS

TTS

TT
B
S
GGG
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   656...660.........670.........680.........690....... ..700.........710.........720......
 
   627..630.........640.........650.........660.........670.........680.........690.........700......
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Query Sequence  RDDPEANPLKTPSGKIEIYSSRLAEIARTWELEKDEVISPLPVYASTFEGWNSPERRTFPLQLFGFHYKSRTHSTYGNID
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Template Sequence  RDDG. . . . . TTASS. CWIYTGSWTEQGNQMANRDNSDPSGLGNTLG. . . . . . . . . . . . . . WAWAWPLNRRVLYNRASADI
Template Known Secondary structure 
SSS.....S
S.
GGGTTSTTGGG
B



TTSSS

TT..............BSTTTT
SSTTGGGGB
T
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   727..730 ..... ....740.........750.........760...... ...770.........780......
 
   707..710... ......720.........730.........740.
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Query Sequence  LLKAACR. . QEVWINPIDAQKRGIANGDMVRVFNHRG
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Template Sequence  NGKPWDPKRMLIQWNGSKWTGNDIPDFGNAAPGTPTG
Template Known Secondary structure  TS
BSSTTS


SSSSS

SS
S

TTSS

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   787..790.........800.........810.........820...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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