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Job DescriptionP77374
Confidence100.00%DateThu Jan 5 12:28:16 GMT 2012
Rank22Aligned Residues580
% Identity28%Templated1eu1a2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   54.....60.........70.........80.........90.........100.........110........ .120..
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Query Sequence  GACSVNCGSRCALRLHVKDNEVTWVETDNTGSDEYGNHQVRACLRGRSIRRRINHPDRLNYPMKR. . . . . . . . . . . VGKR
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Template Sequence  EVMSG. CHWGV. FKARVENGRAVAFEPW. . . . DKDPAPSHQLPGVL. . . . DSIYSPTRIKYPMVRREFLEKGVNADRSTR
Template Known Secondary structure  .TT.TT
....TT
SS

TT....TTTSTTB

S
GGGS
GGGT
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   7..10. ..... ...20.........30.. .......40...... ...50.........60.........70......
 
   123......130.........140.........150.........160.........170.........180.........190.........200..
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Query Sequence  GEGKFERISWDEALDTIASSLKKTVEQYGNEAVYIQYSSGIVGGNMTRSSPSASAVKRLMNCYGGSLNQYGSYSTAQISC
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Template Sequence  GNGDFVRVTWDEALDLVARELKRVQESYGPTGTFGGSYGWKSP. . . GRLHNCQVLMRRALNLAGGFVNSSGDYSTAAAQI
Template Known Secondary structure  TSS



GGG








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SS

T

BS
SSSTT
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   77..80.........90.........100.........110......... 120.........130.........140.........150...
 
   203...... 210.........220.........230.........240. ........250.........260.........270...
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Query Sequence  AMPYTYG. . . . . SNDGNSTTDIENSKLVVMFGNNPAETRMSGGG. . . . ITYLLEKAREKSNAKMIVIDPRYTDTAAGRED
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Template Sequence  IMPHVMGTLEVYEQQTAWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKE. KGTRVIINPVRTETADYFGA
Template Known Secondary structure  TSS

TTS

S

SS

TT

SSB


.T



SS

T
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   154.....160.........170.........180.........190.........200.........210.. .......220.........230..
 
   274.....280.........290.........300.........310.........320.........330.........340.........350...
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Query Sequence  EWLPIRPGTDAALVAGIAWVLINENLVDQPFLDKYCVGYDEKTLPADAPKNGHYKAYILGEGDDKTAKTPQWASQITGIP
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Template Sequence  DVVSPRPQTDVALMLGMAHTLYSEDLHDKDFLENCTTGFDLFAA. . . . . . . . . . . . . YLTGESDGTPKTAEWAAEICGLP
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TT
TT
S

.............TTTTTS




S
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   234.....240.........250.........260.........270....... ..280.........290.........300
 
   354.....360.........370.........380.........390.........400.........410.........420.........430...
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Query Sequence  EDRIIKLAREIGTAKPAYICQGWGPQRQANGELTARAIAMLPILTGNVGISGGNSGARESTYTITIERLPVLDNPVKTSI
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Template Sequence  AEQIRELARSFV. AGRTMLAAGWSIQRMHHGEQAHWMLVTLASMIGQIGLPGGGFGLSYHYSNGGSPTSDGPALGGISDG
Template Known Secondary structure  .SS

SGGGSSTTTT
TTSTT
S
TTSTTTTS


S









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   301........310.. .......320.........330.........340.........350.........360.........370.........
 
   434.... .440.........450.........460.........470.........480.........490.........500.........
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Query Sequence  SCFSW. . . . TDAIDHGPQMTAIRDGVRGKDKLDVPIKFIWNYAGNTLVNQHSDINKTHEILQDESKCEMIVVIENFMTSS
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Template Sequence  GEGGATSIPCARVVDMLLNPGGEFQFNGATATYPDVKLAYWAGGNPFAH. HQDRNRMLKAW. . . EKLETFIVQDFQWTAT
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SGGG
TT
TT




S

.SS
G...GG
SSB

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   380.........390.........400.........410.........420........ .430......... 440.........450.....
 
   510.........520.........530.........540.........550.........560.........570.........580.. .....
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Query Sequence  AKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFLQPVTSEKFERKPIYWILSEVAKRLGPDVYQKFTEGRTQE. . QWLQH
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Template Sequence  ARHADIVLPATTSYERNDIE. SVGDYSNRAILAMKKVVDPLYEARSDYDIFAALAERLGKGAEFTEGRDEMGWISSFYEA
Template Known Secondary structure  T
SB

GGGS
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TTT




S


TT
B
TT
TT

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   466...470.........480..... ....490.........500.........510.........520.........530.........540....
 
   588.590.........600.........610.........620 .........630.........640.........650.........660......
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Query Sequence  LYAKMLAKDPALPSYDELKKMGIYKRKDPNGHF. VAYKAFRDDPEANPLKTPSGKIEIYSSRLAEIARTWELEKDEVISP
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Template Sequence  AVKQAEFKNVAMPSFEDFWSEGIVEFPITEGANFVRYADFREDPLFNPLGTPSGLIEIYSKNIEKMGY. . . . . . . DDCPA
Template Known Secondary structure  TT








SGGGG

TT
TTTS

SSTTSSSS


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   545....550.........560.........570.........580.........590.........600.........610.. .....
 
   667..670...
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Query Sequence  LPVYAST
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Template Sequence  HPTWMEP
Template Known Secondary structure  S





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   618.620....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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