Job Description P77374 Confidence 38.29% Date Thu Jan 5 12:28:16 GMT 2012 Rank 139 Aligned Residues 112 % Identity 15% Template c3shoA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, rpir family; PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain) Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	L	K	K	T	V	E	Q	Y	G	N	E	A	V	Y	I	Q	Y	S	S	G	I	V	G	G	N	M	T	R	S	S	P	S	A	S	A	V	K	R	L	M	N	C	Y	G	G	S	L	N	Q	Y	G	S	Y	S	T	A	Q	I	S	C	A	M	P	Y	T	Y	G	S	N	D	G	N	S	T	T	D	I	E
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	I	E	A	A	V	E	A	I	R	A	D	H	V	I	V	V	G	X	G	.	.	.	.	.	.	.	.	F	S	A	A	V	A	V	F	L	G	H	G	L	N	S	L	G	I	R	T	T	V	L	T	E	G	G	S	T	L	T	I	T	L	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R
Template Known Secondary structure														S								G	.	.	.	.	.	.	.	.	G	G														T	T										T									T	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.									.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.														.	180
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	K	L	V	V	M	F	G	N	N	P	A	E	T	R	M	S	G	G	G	I	T	Y	L	L	E	K	A	R	E	K	S	N	A	K	M	I	V	I	D	P	R	Y	T	D	T	A	A	G	R	E	D	E	W	L	P	I	R
Query Conservation
Alig confidence										.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.
Template Sequence		P	T	D	L	X	I	G	V	.	.	.	.	.	.	S	V	W	R	Y	L	R	D	T	V	A	A	L	A	G	A	A	E	R	G	V	P	T	X	A	L	T	D	S	S	V	S	P	P	A	R	I	A	D	H	V	L	V	A	A
Template Known Secondary structure		T	T							.	.	.	.	.	.			S	S															T	T								S		T	T	S							S
Template Predicted Secondary structure										.	.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.							190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions