Job Description P77374 Confidence 90.77% Date Thu Jan 5 12:28:16 GMT 2012 Rank 70 Aligned Residues 187 % Identity 16% Template c3knzA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:putative sugar binding protein; PDBTitle: crystal structure of putative sugar binding protein (np_459565.1) from2 salmonella typhimurium lt2 at 2.50 a resolution Resolution 2.50 Å

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		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	A	S	S	L	K	K	T	V	E	Q	Y	G	N	E	A	V	Y	I	Q	Y	S	S	G	I	V	G	G	N	M	T	R	S	S	P	S	A	S	A	V	K	R	L	M	N	C	Y	G	G	S	L	N	Q	Y	G	S	Y	S	T	A	Q	I	S	C	A	M	P	Y	T	Y	G	S	N	D	G	N	S	T	T
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	D	L	W	R	A	A	Q	A	L	T	E	R	G	V	T	R	I	I	L	T	G	S	G	.	.	.	.	.	.	.	.	T	S	Y	H	G	A	L	T	A	R	T	F	X	Q	R	W	C	A	L	P	V	D	V	C	W	P	F	X	L	D	D	E	T	L	A	R	S	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														T	T											.	.	.	.	.	.	.	.																		T	S							G	G	G									S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40									.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.								.	.	.	290
Predicted Secondary structure																																																																							.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.
Query Sequence		D	I	E	N	S	K	L	V	V	M	F	G	N	N	P	A	E	T	R	M	S	G	G	G	I	T	Y	L	L	E	K	A	R	E	K	S	N	A	K	M	I	V	I	D	P	R	Y	T	D	T	A	A	G	R	E	D	E	W	L	P	I	R	P	G	T	D	A	A	L	.	.	.	.	.	.	.	V	A	G	I
Query Conservation																																																																							.	.	.	.	.	.	.
Alig confidence		.	.	.									.	.	.	.	.	.																																																					.	.	.	.	.	.	.
Template Conservation		.	.	.									.	.	.	.	.	.
Template Sequence		.	.	.	G	K	A	L	V	V	G	I	.	.	.	.	.	.	S	Q	G	G	G	S	L	S	T	L	A	A	X	E	R	A	R	N	V	G	H	I	T	A	S	X	A	G	V	A	P	A	T	I	D	R	A	A	D	Y	I	L	T	V	P	C	G	E	T	K	G	Y	H	C	T	V	L	N	L	X	L	L	A
Template Known Secondary structure		.	.	.		S							.	.	.	.	.	.		S	S	S															T	T								S	S	S	S		G	G	G	G	G		S											T
Template Predicted Secondary structure		.	.	.									.	.	.	.	.	.
Template SS confidence
					78	.	80	.	.	.	.	.							.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	V	L	I	N	E	N	L	V	D	Q	P	F	L	D	K	Y	C	V	G	Y	D	E	K	T	L	P	A	D	A	P	K	N	G	H	Y	K	A	Y	I	L	G	E	G	D	D	K	T	A	K	T	P	Q	W	A	S	Q	I	T	G	I	P	E	D	R	I	I	K	L	A	R	E	I	G	T	A	K	P	A
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Sequence		L	A	V	A	G	Q	Q	Q	R	L	D	G	E	Q	R	R	S	L	L	L	R	X	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	F	N	H	L	P	A	L	V	T	A	S	Q	A	W	A	Q	T	N	A	L	A	L	R	D	.	S	A	D
Template Known Secondary structure								T	T		S															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T						T	.		S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.																												.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.
		371	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	C	Q	G	W	G	P	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	R	L	T	G	P	A	T	L	F
Template Known Secondary structure								G	G	G
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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