Job Description P77374 Confidence 89.32% Date Thu Jan 5 12:28:16 GMT 2012 Rank 75 Aligned Residues 148 % Identity 11% Template c2yvaB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:dnaa initiator-associating protein diaa; PDBTitle: crystal structure of escherichia coli diaa Resolution 1.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	A	L	D	T	I	A	S	S	L	K	K	T	V	E	Q	Y	G	N	E	A	V	Y	I	Q	Y	S	S	G	I	V	G	G	N	M	T	R	S	S	P	S	A	S	A	V	K	R	L	M	N	C	Y	G	G	S	L	N	Q	Y	G	S	Y	S	T	A	Q	I	S	C	A	M	P	Y	T	Y	G	S	N	D
Query Conservation
Alig confidence																			.	.											.	.	.	.	.	.	.
Template Conservation																			.	.											.	.	.	.	.	.	.
Template Sequence		P	D	A	I	S	R	A	A	M	T	L	V	Q	S	L	L	N	.	.	G	N	K	I	L	C	C	G	N	G	.	.	.	.	.	.	.	T	S	A	A	N	A	Q	H	F	A	A	S	M	I	N	R	F	E	T	E	R	P	S	L	P	A	I	A	L	N	T	D	N	V	V	L	T	A	I	A	N	D	R	L
Template Known Secondary structure																		T	.	.	T								S	T	.	.	.	.	.	.	.															T		S	S	S										S	S										T	T	S	T	T
Template Predicted Secondary structure																			.	.											.	.	.	.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50								.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		213	.	.	.							.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.				.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure						.	.	.	.	.	.																																																								.	.	.
Query SS confidence						.	.	.	.	.	.																																																								.	.	.
Query Sequence		G	N	S	T	.	.	.	.	.	.	T	D	I	E	N	S	K	L	V	V	M	F	G	N	N	P	A	E	T	R	M	S	G	G	G	I	T	Y	L	L	E	K	A	R	E	K	S	N	A	K	M	I	V	I	D	P	R	Y	T	D	T	A	A	G	R	.	.	.	E	D	E	W	L	P	I	R	P	G	T	D
Query Conservation						.	.	.	.	.	.																																																								.	.	.
Alig confidence						.	.	.	.	.	.													.	.	.	.	.	.																																						.	.	.								.
Template Conservation																								.	.	.	.	.	.																																																.
Template Sequence		H	D	E	V	Y	A	K	Q	V	R	A	L	G	H	A	G	D	V	L	L	A	I	.	.	.	.	.	.	S	T	R	G	N	S	R	D	I	V	K	A	V	E	A	A	V	T	R	D	M	T	I	V	A	L	T	G	Y	D	G	G	E	L	A	G	L	L	G	P	Q	D	V	E	I	R	I	.	P	S	H	R
Template Known Secondary structure		G	G	G	T	T										T	T							.	.	.	.	.	.		S	S	S															T	T									T	T										T	T							.	S		S
Template Predicted Secondary structure																								.	.	.	.	.	.																																																.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.							.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	V	A	G	I	A	W	V	L	I	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	R	I	Q	E	M	H	M	L	T	V	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions