Job Description P77374 Confidence 100.00% Date Thu Jan 5 12:28:16 GMT 2012 Rank 13 Aligned Residues 699 % Identity 23% Template c2v45A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	A	R	E	K	V	V	W	G	A	C	S	V	N	C	G	S	R	C	A	L	R	L	H	V	K	D	N	E	V	T	W	V	E	T	D	N	T	G	S	D	E	Y	G	N	H	Q	V	R	A	C	L	R	G	R	S	I	R	R	R	I	N	H	P	D	R	L	N	Y	P	M	K	R	V	G	K	R	G	E
Query Conservation
Alig confidence																.																							.	.	.	.					.																														.	.
Template Conservation																.																							.	.	.	.					.																														.	.
Template Sequence		D	N	R	P	E	K	W	V	K	G	V	C	R	Y	.	C	G	T	G	C	G	V	L	V	G	V	K	D	G	K	A	V	A	I	Q	G	N	.	.	.	.	P	N	N	H	.	N	A	G	L	L	C	L	K	G	S	L	L	I	P	V	L	N	S	K	E	R	V	T	Q	P	L	V	R	R	.	.	H	K	G
Template Known Secondary structure			S	S		S								S	S	.		T	T										T	T									.	.	.	.	T	T	S	T	.	T	T	T								T						T		S		S			S					S	.	.	S	T	T
Template Predicted Secondary structure																.																							.	.	.	.					.																														.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.					.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		G	K	F	E	R	I	S	W	D	E	A	L	D	T	I	A	S	S	L	K	K	T	V	E	Q	Y	G	N	E	A	V	Y	I	Q	Y	S	S	G	I	V	G	G	N	M	T	R	S	S	P	S	A	S	A	V	K	R	L	M	N	C	Y	G	G	S	L	N	Q	.	.	Y	G	S	Y	S	T	A	Q	I	S	C
Query Conservation																																																																					.	.
Alig confidence																																							.	.	.	.	.	.	.																								.	.
Template Conservation																																							.	.	.	.	.	.	.
Template Sequence		G	K	L	E	P	V	S	W	D	E	A	L	D	L	M	A	S	R	F	R	S	S	I	D	M	Y	G	P	N	S	V	A	W	Y	G	S	G	.	.	.	.	.	.	.	Q	C	L	T	E	E	S	Y	V	A	N	K	I	F	K	G	G	F	G	T	N	N	V	D	G	N	P	R	L	C	M	A	S	A	V	G
Template Known Secondary structure																													G	G	G							T	.	.	.	.	.	.	.	T	S														T	T	T								G	G	G	G	T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110								.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		203	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		A	M	P	Y	T	Y	G	.	S	N	D	G	N	S	T	T	D	I	E	N	S	K	L	V	V	M	F	G	N	N	P	A	E	T	R	M	S	G	G	G	I	T	Y	L	L	E	K	A	R	E	K	S	N	A	K	M	I	V	I	D	P	R	Y	T	D	T	A	A	G	R	E	D	E	W	L	P	I	R	P	G
Query Conservation									.
Alig confidence									.																																					.	.																							.
Template Conservation																																														.	.																							.
Template Sequence		G	Y	V	T	S	F	G	K	D	E	P	M	G	T	Y	A	D	I	D	Q	A	T	C	F	F	I	I	G	S	N	T	S	E	A	H	P	V	L	F	R	R	I	A	R	.	.	R	K	Q	V	E	P	G	V	K	I	I	V	A	D	P	R	R	T	N	T	S	R	.	I	A	D	M	H	V	A	F	R	P	G
Template Known Secondary structure								S	S		S		S	S		G	G	G	G	G	T		S						S							S										.	.						T	T								S	B			G	G	G	G	.	G		S							T	T
Template Predicted Secondary structure																																														.	.																							.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	A	A	L	V	A	G	I	A	W	V	L	I	N	E	N	L	V	D	Q	P	F	L	D	K	Y	C	V	G	Y	D	E	K	T	L	P	A	D	A	P	K	N	G	H	Y	K	A	Y	I	L	G	E	G	D	D	K	T	A	K	T	P	Q	W	A	S	Q	I	T	G	I	P	E	D	R	I	I	K	L	A
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.
Template Sequence		T	D	L	A	F	M	H	S	M	A	W	V	I	I	N	E	E	L	D	N	P	R	F	W	Q	R	Y	V	N	F	M	D	A	E	G	K	P	S	D	.	.	.	.	.	.	.	.	.	.	F	E	G	Y	K	A	F	L	E	N	Y	R	P	E	K	V	A	E	I	C	R	V	P	V	E	Q	I	Y	G	A	A
Template Known Secondary structure																	T	T		S														T	T	S		B			.	.	.	.	.	.	.	.	.	.									G	G	G										T	S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.											.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.													420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	I	G	T	A	K	P	A	Y	I	C	Q	G	W	G	P	Q	R	Q	A	N	G	E	L	T	A	R	A	I	A	M	L	P	I	L	T	G	N	V	G	I	S	G	G	N	S	G	A	R	E	S	T	Y	T	I	T	I	.	.	.	.	.	.	.	.	.	.	.	.	E	R	L	P	V	L	D	N	P	V
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	A	F	A	E	S	A	A	T	M	S	L	W	C	M	G	I	N	Q	R	V	Q	G	V	F	A	N	N	L	I	H	N	L	H	L	I	T	G	Q	I	C	R	P	G	A	T	S	F	S	L	T	G	Q	P	N	A	C	G	G	V	R	D	G	G	A	L	S	H	L	L	P	A	G	R	A	I	P	N	A	K
Template Known Secondary structure							S	S	S											S	S	T	T																T			S	B	T	T	B								S	T	T					T	T	T	T	T		S	T	T			T	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.		.	.	500	.	.	.	.	.	.		.
Predicted Secondary structure																																																																						.										.
Query SS confidence																																																																						.										.
Query Sequence		K	T	S	I	S	C	F	S	W	T	D	A	I	D	H	G	P	Q	M	T	A	I	R	D	G	V	R	G	K	D	K	L	D	V	P	I	K	F	I	W	N	Y	A	G	N	T	L	V	N	Q	H	S	D	I	N	K	T	H	E	I	L	Q	D	E	S	K	C	E	.	M	I	V	V	I	E	N	F	M	.	T
Query Conservation																																																																						.										.
Alig confidence																																																			.												.	.	.					.										.
Template Conservation																																																			.												.	.	.
Template Sequence		H	R	A	E	M	E	K	L	W	G	L	P	E	G	R	I	A	P	E	P	G	Y	H	T	V	A	L	F	E	A	L	G	R	G	D	V	K	C	M	I	I	C	E	T	N	P	A	H	T	.	L	P	N	L	N	K	V	H	K	A	M	.	.	.	S	H	P	E	S	F	I	V	C	I	E	A	F	P	D	A
Template Known Secondary structure										T	T			T	T		S		S	S															T	S								S							.	S	S	S								T	.	.	.	T		T	T								S		T	T
Template Predicted Secondary structure																																																			.												.	.	.
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.		.	.	.	.	.	.	.	430	.	.	.				.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	A	K	Y	A	D	I	L	L	P	D	L	M	T	V	E	Q	E	D	I	I	P	N	D	Y	A	G	N	M	G	Y	L	I	F	L	Q	P	V	T	S	E	K	F	E	R	K	P	I	Y	W	I	L	S	E	V	A	K	R	L	G	P	D	V	Y	Q	K	F	T	E	G	R	T	Q	E	Q	W	L	Q	H
Query Conservation
Alig confidence																					.	.	.	.																																									.	.
Template Conservation																					.	.	.	.																																									.	.
Template Sequence		V	T	L	E	Y	A	D	L	V	L	P	P	A	F	W	C	E	R	D	.	.	.	.	G	V	Y	G	C	G	E	R	R	Y	S	L	T	E	K	A	V	D	P	P	G	Q	C	R	P	T	V	N	T	L	V	E	F	A	R	R	A	G	V	D	.	.	P	Q	L	V	N	F	R	N	A	E	D	V	W	N	E
Template Known Secondary structure		G	G	G	G	S		S					B			G	G	G	S		.	.	.	.						T	T	S									S			S	T	T		B													T	T			.	.	T	T	T	T			S	S
Template Predicted Secondary structure																					.	.	.	.																																									.	.
Template SS confidence
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.					.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.			.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
		588	.	590	.	.	.	.	.	.			.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		L	Y	A	K	M	L	A	K	D	.	.	P	A	L	P	S	Y	D	E	L	K	K	M	G	I	Y	K	R	K	D	P	N	G	H	F	V	A	Y	K	A	F	R	D	D	P	E	A	N	P	L	K	T	P	S	G	K	I	E	I	Y	S	S	R	L	A	E	I	A	R	T	W	E	L	E	K	D	E	V	I	S
Query Conservation											.	.
Alig confidence											.	.																									.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Sequence		W	R	M	V	S	K	G	T	T	Y	D	F	W	G	M	T	R	E	R	L	R	K	E	S	G	L	I	W	P	C	P	S	E	D	H	.	.	.	.	.	.	.	.	.	.	P	G	T	S	L	R	Y	V	R	G	Q	D	P	C	V	P	A	D	H	P	D	R	F	F	F	Y	G	K	P	D	G	R	.	.	.
Template Known Secondary structure							T	T	S	T	T			T	T									S	S				S				S	T	T		.	.	.	.	.	.	.	.	.	.				S	S	T	T	B	T	T	T	S	T	T	S		T	T		S	S	S	B			T	T	S	T	T	S		.	.	.
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template SS confidence
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.											.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590
		666	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.			.	.	.	.	.	.	.	710	.		.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.
Predicted Secondary structure																																							.	.										.
Query SS confidence																																							.	.										.
Query Sequence		P	L	P	V	Y	A	S	T	F	E	G	W	N	S	P	E	R	R	T	F	P	L	Q	L	F	G	F	H	Y	K	S	R	T	H	S	T	Y	.	.	G	N	I	D	L	L	K	A	A	.	C	R	Q	E	V	W	I	N	P	I	D	A	Q	K	R	G	I	A	N	G	D	M	V	R	V	F	N	H	R	G	E
Query Conservation																																							.	.										.
Alig confidence		.																																					.	.										.
Template Conservation		.
Template Sequence		.	A	V	I	W	M	R	P	A	K	G	A	A	E	E	P	D	A	E	Y	P	L	Y	L	T	S	M	R	V	I	D	H	W	H	T	A	T	M	T	G	K	V	P	E	L	Q	K	A	N	P	I	A	F	V	E	I	N	E	E	D	A	A	R	T	G	I	K	H	G	D	S	V	I	V	E	T	R	R	D	A
Template Known Secondary structure		.												S	S				S	S	S										S	S			T	T		T	T	G	G	G		G	G	G	G	S	S		S	S														T			T	T								S	S
Template Predicted Secondary structure		.
Template SS confidence
			591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.
		743	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	L	P	A	K	V	T	P	R	I	L	P	G	V	S	A	M	G	Q	G	A	W	H	E	A	N	M	S	G	D	K	I	D	H	G	G	C	V	N	T	L	T	T	L	R	P	S	P	L	A	K	G	N	P	Q	H	T	N	L	V	E	I	E	K
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	E	L	P	A	R	V	S	D	V	C	R	P	G	L	I	A	V	P	F	F	D	P	.	.	.	.	.	.	.	.	.	.	.	.	K	K	L	V	N	K	L	F	L	D	A	T	D	P	V	S	R	E	P	E	Y	K	I	C	A	A	R	V	R	K
Template Known Secondary structure										S	S	B		T	T									T	.	.	.	.	.	.	.	.	.	.	.	.	T	S		G	G	G	T	S				B		T	T	T			B		T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.													.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.