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Job DescriptionP77374
Confidence100.00%DateThu Jan 5 12:28:16 GMT 2012
Rank5Aligned Residues735
% Identity24%Templatec1h0hA_
PDB info PDB header:dehydrogenaseChain: A: PDB Molecule:formate dehydrogenase (large subunit); PDBTitle: tungsten containing formate dehydrogenase from2 desulfovibrio gigas
Resolution1.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70 .........80.........90.........100.........110.......
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Query Sequence  AAAAVQQAREKVVWGACSVNCGSRCALRLHV. . KDNEVTWVETDNTGSDEYGNHQVRACLRGRSIRRRINHPDRLNYPMK
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Template Sequence  ATMALKTVDAKQTTSVCCY. CSVGCGLIVHTDKKTNRAINVEGD. . . . PDHPINEGSLCAKGASTWQLAENERRPANPLY
Template Known Secondary structure 




TTTTS
SS.BTT


TTT


....TT
TTTTT


TS
TTS
SS
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   1........10......... 20.........30.........40... ......50.........60.........70.....
 
   118.120.........130.........140.........150...... ...160.........170.........180.........190..
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Query Sequence  RVGKRGEGKFERISWDEALDTIASSLKKTVEQYGNEAVY. . . . . IQYSSGIVGGNMTRSSPSASAVKRLMNCYGGSLNQY
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Template Sequence  RAP. . GSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGLFYIEH
Template Known Secondary structure 
T..T
SS



TTS

S

TTS
TTB


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   76.. .80.........90.........100.........110.........120.........130.........140.........150...
 
   193......200......... 210.........220.........230.........240.........250.........260.........270.
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Query Sequence  GSYSTAQISCAMPYTYG. SNDGNSTTDIENSKLVVMFGNNPAETRMSGGGITYLLEKAREKSNAKMIVIDPRYTDTAAGR
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Template Sequence  QARIHSATVAALAESYGRGAMTNHWIDLKNSDVILMMGSNPAENHPIS. . . FKWVMRAKD. KGATLIHVDPRYTRTST. K
Template Known Secondary structure  GGG

S

S
SS
TGGGGG
SS

STT....TT

SS

TTGG.G
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   154.....160.........170.........180.........190.........200. ........210 .........220....... .
 
   272.......280.........290.........300.........310. .......
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Query Sequence  EDEWLPIRPGTDAALVAGIAWVLINENLVDQPFLDKYCVG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YDEKTLP
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Template Sequence  CDLYAPLRSGSDIAFLNGMTKYILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFAGYNKETRKYDKSKWGFERDENGNP
Template Known Secondary structure 
S


TT
TT
S
BGGGBBB
TT

TTTTTTTT
GGGG
B
B
TTS
B
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   230.........240.........250.........260.........270.........280.........290.........300.........
 
   319320.........330.........340.........350.........360....... ..370.........380.........390....
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Query Sequence  ADAPKNGHYKAYILGEGDDKTAKTPQWASQITGIPEDRIIKLAREIGTA. . . . KPAYICQGWGPQRQANGELTARAIAML
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Template Sequence  KRDETLKHPRCVFQIMKKHYERYDLDKISAICGTPKELILKVYDAYCATGKPDKAGTIMYAMGWTQHTVGVQNIRAMSIN
Template Known Secondary structure 
B
TTS
STTBTT




GGGSTT





SS
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   310.........320.........330.........340.........350.........360.........370.........380.........
 
   395....400.........410.........420......
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Query Sequence  PILTGNVGISGGNSGARESTYTITIERLPVLD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  QLLLGNIGVAGGGVNALRGEANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASY
Template Known Secondary structure  TT
SSSTT
S

SBTTTT
BTTTTT

BTT

S





TT


GGGG
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   390.........400.........410.........420.........430.........440.........450.........460.........
 
   427..430.........440.........450.........460.........470.........480.........490.........500.....
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Query Sequence  . NPVKTSISCFSWTDAIDHGPQMTAIRDGVRGKDKLDVPIKFIWNYAGNTLVNQHSDINKTHEILQDESKCEMIVVIENF
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Template Sequence  IKSMWPDADLNEAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACS. GANSNKTREAL. . . TKLDWMVNVNIF
Template Known Secondary structure 
TTS
S

B
TT


STT


S

.SBS...TT
SSS
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   470.........480.........490.........500.........510.........520.. .......530... ......540.....
 
   506...510... ......520.........530.........540.........550.........560.........
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Query Sequence  MTSSAKYA. . . . . . . . . . . . . DILLPDLMTVEQEDIIPNDYAGNMGYLIFLQPVTSEKFERKPIYWILSEVAKRLGP. . .
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Template Sequence  DNETGSFWRGPDMDPKKIKTEVFFLPCAVAIEKE. . . . GSISNSGRWMQWRYVGPEPRKNAIPDGDLIVELAKRVQKLLA
Template Known Secondary structure 

TTTTGGGSTT

GGG


B

GGG

....
TT


SS


TT
B
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   546...550.........560.........570......... 580.........590.........600.........610.........620.
 
   570.........580.........590...... ...600.........610.....
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Query Sequence  . . . . . . . . . . . . . . DVYQKFTEGRTQEQWLQHLYAKMLAKD. . . . . . . . . . . PALPSYDELKKMGIYKRKD. . . . . . . . .
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Template Conservation                                                                  
               
Template Sequence  KTPGKLAAPVTKLKTDYWVNDHGHFDPHKIAKLINGFALKDFKVGDVEYKAGQQIATFGHLQADGSTTSGCWIYTGSYTE
Template Known Secondary structure  S
TT

S
GGGGB
TTS
B

BBSS
TT
TT
B
S
GGG

TTS
B

SSGGGTTST
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   622.......630.........640.........650.........660.........670.........680.........690.........700.
 
   616...620.........630....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PNGHFVAYKAFRDDPEANP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                               
                                                  
Template Sequence  KGNMAARRDKTQTDMQAKIGLYPGWTWAWPVNRRIIYNRASVDLNGKPYAPEKAVVEWNAAEKKWVGDVPDGPWPPQADK
Template Known Secondary structure  TGGG
B




T

TTBSTTTT
SSTTGGGGB
TTS
BS
GGG
STTTTS

SS
S

TT
T
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   702.......710.........720.........730.........740.........750.........760.........770.........780.
 
   635....640.........650.........660.........670.........680. ....
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Query Sequence  . . . . . . . LKTPSGKIEIYSSRLAEIARTWELEKDEVISPLPVYASTFEGWNSPE. . . . . . . . . . . . . . . . . . . . . . RRTF
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Template Sequence  EKGKRAFIMKPEGYAYLYGPGRE. . . . . . . . . . . . . DGPLPEYYEPMECPVIEHPFSKTLHNPTALHFATEEKAVCDPRY
Template Known Secondary structure  TT


S
TTSSSS
B
SS
TTST.............T
SS






SSS



SS
S

S
TT

SS

SS




TTS
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   782.......790.........800.... .....810.........820.........830.........840........
 
   686...690.........700 .........710. ........720.........730.........740.........750.........760..
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Query Sequence  PLQLFGFHYKSRTHS. . TYGNIDLLKAA. CRQEVWINPIDAQKRGIANGDMVRVFNHRGEVRLPAKVTPRILPGVSAMGQ
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Template Sequence  PFICSTYRVTEHWQTGLMTRNTPWLLEAEPQMFCEMSEELATLRGIKNGDKVILESVRGKLWAKAIITKRIKPFAIQGQQ
Template Known Secondary structure 


TT

TTSTSS
S

T

TT
TT
TT


TT
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   849850.........860.........870.........880.........890.........900.........910.........920........
 
   763...... 770.........780.........790.........800.......
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Query Sequence  GAWHEAN. . . MSGDKIDHGGCVNTLTTLRPSPLAKGNPQHTNLVEIEK
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Template Conservation     
  
   
       
   
 

    

 

    
   
 
 
Template Sequence  VHMVGIPWHYGWSFPKNGGDAANILTPSVGNPNTGIPETKAFMVNVTK
Template Known Secondary structure 
S


TTSSTTS


GGGS

BSSS
SSBSB

S
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   929930.........940.........950.........960.........970......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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