Job Description P77374 Confidence 100.00% Date Thu Jan 5 12:28:16 GMT 2012 Rank 7 Aligned Residues 714 % Identity 29% Template c1eu1A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dimethyl sulfoxide reductase; PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments. Resolution 1.30 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.												.	120	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	C	S	V	N	C	G	S	R	C	A	L	R	L	H	V	K	D	N	E	V	T	W	V	E	T	D	N	T	G	S	D	E	Y	G	N	H	Q	V	R	A	C	L	R	G	R	S	I	R	R	R	I	N	H	P	D	R	L	N	Y	P	M	K	R	.	.	.	.	.	.	.	.	.	.	.	V	G	K	R
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.																					.	.	.	.															.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.																					.	.	.	.															.	.	.	.
Template Sequence		G	E	V	M	S	G	C	.	H	W	G	V	F	K	A	R	V	E	N	G	R	A	V	A	F	E	P	W	.	.	.	.	D	K	D	P	A	P	S	H	Q	L	P	G	V	L	.	.	.	.	D	S	I	Y	S	P	T	R	I	K	Y	P	M	V	R	R	E	F	L	E	K	G	V	N	A	D	R	S	T	R
Template Known Secondary structure									.	T	T									T	T									.	.	.	.	T	T		S	S			T	T						.	.	.	.		T	T	T	S	T	T	B			S											G	G	G	S		G	G	G	T
Template Predicted Secondary structure									.																					.	.	.	.															.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.					.	.	.	.	.	.	.	40	.	.	.	.	.	.					.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	G	K	F	E	R	I	S	W	D	E	A	L	D	T	I	A	S	S	L	K	K	T	V	E	Q	Y	G	N	E	A	V	Y	I	Q	Y	S	S	G	I	V	G	G	N	M	T	R	S	S	P	S	A	S	A	V	K	R	L	M	N	C	Y	G	G	S	L	N	Q	Y	G	S	Y	S	T	A	Q	I	S	C
Query Conservation
Alig confidence																																													.	.	.
Template Conservation																																													.	.	.
Template Sequence		G	N	G	D	F	V	R	V	T	W	D	E	A	L	D	L	V	A	R	E	L	K	R	V	Q	E	S	Y	G	P	T	G	T	F	G	G	S	Y	G	W	K	S	P	.	.	.	G	R	L	H	N	C	Q	V	L	M	R	R	A	L	N	L	A	G	G	F	V	N	S	S	G	D	Y	S	T	A	A	A	Q	I
Template Known Secondary structure		T	S	S																											G	G	G												.	.	.		S	S															T			B				S		S	S	S	T	T
Template Predicted Secondary structure																																													.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.						.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.					.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure															.	.	.	.	.																											.	.	.	.
Query SS confidence															.	.	.	.	.																											.	.	.	.
Query Sequence		A	M	P	Y	T	Y	G	S	N	D	G	N	S	.	.	.	.	.	T	T	D	I	E	N	S	K	L	V	V	M	F	G	N	N	P	A	E	T	R	M	S	G	G	G	.	.	.	.	I	T	Y	L	L	E	K	A	R	E	K	S	N	A	K	M	I	V	I	D	P	R	Y	T	D	T	A	A	G	R	E	D
Query Conservation															.	.	.	.	.																											.	.	.	.
Alig confidence															.	.	.	.	.																											.	.	.	.												.
Template Conservation																																																													.
Template Sequence		I	M	P	H	V	M	G	T	L	E	V	Y	E	Q	Q	T	A	W	P	V	V	V	E	N	T	D	L	M	V	F	W	A	A	D	P	M	K	T	N	E	I	G	W	V	I	P	D	H	G	A	Y	A	G	M	K	A	L	K	E	.	K	G	T	R	V	I	I	N	P	V	R	T	E	T	A	D	Y	F	G	A
Template Known Secondary structure							T	S	S			T	T	S			S										S						S							T	T			S	S	B															.		T							S	B									T
Template Predicted Secondary structure																																																													.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	W	L	P	I	R	P	G	T	D	A	A	L	V	A	G	I	A	W	V	L	I	N	E	N	L	V	D	Q	P	F	L	D	K	Y	C	V	G	Y	D	E	K	T	L	P	A	D	A	P	K	N	G	H	Y	K	A	Y	I	L	G	E	G	D	D	K	T	A	K	T	P	Q	W	A	S	Q	I	T	G	I	P
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	V	S	P	R	P	Q	T	D	V	A	L	M	L	G	M	A	H	T	L	Y	S	E	D	L	H	D	K	D	F	L	E	N	C	T	T	G	F	D	L	F	A	A	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	E	S	D	G	T	P	K	T	A	E	W	A	A	E	I	C	G	L	P
Template Known Secondary structure								T	T																T	T		S																				.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T	T	S														S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.														280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.					420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.
Query SS confidence																																																																				.	.	.	.
Query Sequence		E	D	R	I	I	K	L	A	R	E	I	G	T	A	K	P	A	Y	I	C	Q	G	W	G	P	Q	R	Q	A	N	G	E	L	T	A	R	A	I	A	M	L	P	I	L	T	G	N	V	G	I	S	G	G	N	S	G	A	R	E	S	T	Y	T	I	T	I	.	.	.	.	E	R	L	P	V	L	D	N	P	V
Query Conservation																																																																				.	.	.	.
Alig confidence																	.																																																			.	.	.	.
Template Conservation																	.
Template Sequence		A	E	Q	I	R	E	L	A	R	S	F	V	A	G	R	.	T	M	L	A	A	G	W	S	I	Q	R	M	H	H	G	E	Q	A	H	W	M	L	V	T	L	A	S	M	I	G	Q	I	G	L	P	G	G	G	F	G	L	S	Y	H	Y	S	N	G	G	S	P	T	S	D	G	P	A	L	G	G	I	S	D	G
Template Known Secondary structure														S	S		.							S	G	G	G	S	S	T	T	T															T		T	T	S	T	T					S		T	T	S	T	T	T	T	S				S
Template Predicted Secondary structure																	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	S	I	S	C	F	S	W	T	D	A	I	D	H	G	P	Q	M	T	A	I	R	D	G	V	R	G	K	D	K	L	D	V	P	I	K	F	I	W	N	Y	A	G	N	T	L	V	N	Q	H	S	D	I	N	K	T	H	E	I	L	Q	D	E	S	K	C	E	M	I	V	V	I	E	N	F	M	T	S	S
Query Conservation
Alig confidence																																																			.												.	.	.
Template Conservation																																																			.												.	.	.
Template Sequence		G	E	G	G	A	T	S	I	P	C	A	R	V	V	D	M	L	L	N	P	G	G	E	F	Q	F	N	G	A	T	A	T	Y	P	D	V	K	L	A	Y	W	A	G	G	N	P	F	A	H	.	H	Q	D	R	N	R	M	L	K	A	W	.	.	.	E	K	L	E	T	F	I	V	Q	D	F	Q	W	T	A	T
Template Known Secondary structure							S				G	G	G								T	T						T	T															S							.	S	S									G	.	.	.	G	G		S							S	B
Template Predicted Secondary structure																																																			.												.	.	.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.	.	.				440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580			.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence		A	K	Y	A	D	I	L	L	P	D	L	M	T	V	E	Q	E	D	I	I	P	N	D	Y	A	G	N	M	G	Y	L	I	F	L	Q	P	V	T	S	E	K	F	E	R	K	P	I	Y	W	I	L	S	E	V	A	K	R	L	G	P	D	V	Y	Q	K	F	T	E	G	R	T	.	.	Q	E	Q	W	L	Q	H
Query Conservation																																																																									.	.
Alig confidence																						.																																																			.	.
Template Conservation																						.
Template Sequence		A	R	H	A	D	I	V	L	P	A	T	T	S	Y	E	R	N	D	I	E	.	S	V	G	D	Y	S	N	R	A	I	L	A	M	K	K	V	V	D	P	L	Y	E	A	R	S	D	Y	D	I	F	A	A	L	A	E	R	L	G	K	G	A	E	F	T	E	G	R	D	E	M	G	W	I	S	S	F	Y	E	A
Template Known Secondary structure				T		S					B			G	G	G	S					.				T	T	T											S				T	T		B													T	T							T	T
Template Predicted Secondary structure																						.
Template SS confidence
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.		.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
		588	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620		.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		L	Y	A	K	M	L	A	K	D	P	A	L	P	S	Y	D	E	L	K	K	M	G	I	Y	K	R	K	D	P	N	G	H	F	.	V	A	Y	K	A	F	R	D	D	P	E	A	N	P	L	K	T	P	S	G	K	I	E	I	Y	S	S	R	L	A	E	I	A	R	T	W	E	L	E	K	D	E	V	I	S	P
Query Conservation																																			.
Alig confidence																																			.																																			.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.
Template Sequence		A	V	K	Q	A	E	F	K	N	V	A	M	P	S	F	E	D	F	W	S	E	G	I	V	E	F	P	I	T	E	G	A	N	F	V	R	Y	A	D	F	R	E	D	P	L	F	N	P	L	G	T	P	S	G	L	I	E	I	Y	S	K	N	I	E	K	M	G	Y	.	.	.	.	.	.	.	D	D	C	P	A
Template Known Secondary structure									T	T																				S	G	G	G	G			T	T							T	T	T	S			S	S	T	T	S	S			S	S										.	.	.	.	.	.	.	T	T	S		S
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.
Template SS confidence
		545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.								.	.	.	.	.
		667	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.			.	.	.	.	.	710	.		.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.
Predicted Secondary structure																																								.	.								.
Query SS confidence																																								.	.								.
Query Sequence		L	P	V	Y	A	S	T	F	E	G	W	N	S	P	E	R	R	T	F	P	L	Q	L	F	G	F	H	Y	K	S	R	T	H	S	T	Y	G	N	.	.	I	D	L	L	K	A	A	.	C	R	Q	E	V	W	I	N	P	I	D	A	Q	K	R	G	I	A	N	G	D	M	V	R	V	F	N	H	R	G	E	V
Query Conservation																																								.	.								.
Alig confidence													.																											.	.								.
Template Conservation													.
Template Sequence		H	P	T	W	M	E	P	A	E	R	L	.	G	G	A	G	A	K	Y	P	L	H	V	V	A	S	H	P	K	S	R	L	H	S	Q	L	N	G	T	S	L	R	D	L	Y	A	V	A	G	H	E	P	C	L	I	N	P	A	D	A	A	A	R	G	I	A	D	G	D	V	L	R	V	F	N	D	R	G	Q	I
Template Known Secondary structure		S							S	S		T	.	T		T	T			S	S									S	S	S	B	T	T	B	T	T	T	S	G	G	G	G	G	T		B	T	T	B												T	T	T			T	T								S	S
Template Predicted Secondary structure													.
Template SS confidence
		618	.	620	.	.	.	.	.	.	.	.		.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.
		744	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.			.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.		.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.																						.
Query SS confidence																									.	.																						.
Query Sequence		R	L	P	A	K	V	T	P	R	I	L	P	G	V	S	A	M	G	Q	G	A	W	H	.	.	E	A	N	M	S	G	D	K	I	D	H	G	G	C	V	N	T	L	T	T	L	.	R	P	S	P	L	A	K	G	N	P	Q	H	T	N	L	V	E	I	E	K
Query Conservation																									.	.																						.
Alig confidence																									.	.																						.
Template Conservation
Template Sequence		L	V	G	A	K	V	S	D	A	V	M	P	G	A	I	Q	I	Y	E	G	G	W	Y	D	P	L	D	P	S	E	E	G	T	L	D	K	Y	G	D	V	N	V	L	S	L	D	V	G	T	S	K	L	A	Q	G	N	C	G	Q	T	I	L	A	D	V	E	K
Template Known Secondary structure									T	T	B		T	T						T	T					B	S		T	T	S	T	T			B	S	S			G	G	G	S						S		T	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		697	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.