Job Description P76399 Confidence 100.00% Date Thu Jan 5 12:22:40 GMT 2012 Rank 4 Aligned Residues 201 % Identity 27% Template d1iwga8 SCOP info Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Resolution 3.50

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		815	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.		.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		S	D	A	S	A	A	I	D	R	A	M	T	Q	L	G	V	P	S	T	V	R	G	S	F	A	G	T	.	A	Q	V	F	Q	E	T	M	N	S	Q	V	I	L	I	I	A	A	I	A	T	V	Y	I	V	L	G	I	L	Y	E	S	Y	V	H	P	L	T	I	L	S	T	L	P	S	A	G	V	G	A	L	L
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		G	I	L	R	S	T	G	R	Y	L	V	L	Y	L	I	I	V	V	G	M	A	Y	L	F	V	R	L	P	S	S	F	L	P	D	S	G	N	Q	A	P	S	L	Y	A	I	S	L	I	V	V	F	L	C	L	A	A	L	Y	E	S	W	S	I	P	F	S	V	M	L	V	V	P	L	G	V	I	G	A	L	L
Template Known Secondary structure																											S	S		B		S	S					T	T																			T	T		S	S	S					G	G	G
Template Predicted Secondary structure
Template SS confidence
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
		894	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	E	L	F	N	A	P	F	S	L	I	A	L	I	G	I	M	L	L	I	G	I	V	K	K	N	A	I	M	M	V	D	F	A	L	E	A	Q	R	H	G	N	L	T	P	Q	E	A	I	F	Q	A	C	L	L	R	F	R	P	I	M	M	T	T	L	A	A	L	F	G	A	L	P	L	V	L	S	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	T	F	R	G	L	T	N	D	V	Y	F	Q	V	G	L	L	T	T	I	G	L	S	A	K	N	A	I	L	I	V	E	F	A	K	D	L	M	D	K	E	G	K	G	L	I	E	A	T	L	D	A	V	R	M	R	L	R	P	I	L	M	T	S	L	A	F	I	L	G	V	M	P	L	V	I	S	T	G
Template Known Secondary structure						T	T			B																														T	T	S	S				T	T									T	T																				T	T		S
Template Predicted Secondary structure
Template SS confidence
		915	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.
		974	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	S	E	L	R	Q	P	L	G	I	T	I	V	G	G	L	V	M	S	Q	L	L	T	L	Y	T	T	P	V	V	Y	L	F	F	D	R	L	R	L	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	S	G	A	Q	N	A	V	G	T	G	V	M	G	G	M	V	T	A	T	V	L	A	I	F	F	V	P	V	F	F	V	V	V	R	R	R	F	S	R	K
Template Known Secondary structure		S	S																				T	T	T	T	S	S	S	S	S	S								T	S
Template Predicted Secondary structure
Template SS confidence
		995	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions