Job Description P76399 Confidence 99.87% Date Thu Jan 5 12:22:40 GMT 2012 Rank 6 Aligned Residues 96 % Identity 28% Template d1iwga1 SCOP info Ferredoxin-like Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Resolution 3.50

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		V	D	F	P	V	I	I	V	S	A	S	L	P	G	A	S	P	E	T	M	A	S	S	V	A	T	P	L	E	R	S	L	G	R	I	A	G	V	S	E	M	T	S	S	S	S	L	.	G	S	T	R	I	I	L	Q	F	D	F	D	R	D	I	N	G	A	A	R	D	V	Q	A	A	I	N	A	A	Q	S	L
Query Conservation																																																	.
Alig confidence																																																	.
Template Conservation
Template Sequence		I	A	P	P	A	V	T	I	S	A	S	Y	P	G	A	D	A	K	T	V	Q	D	T	V	T	Q	V	I	E	Q	N	M	N	G	I	D	N	L	M	Y	M	S	S	N	S	D	S	T	G	T	V	Q	I	T	L	T	F	E	S	G	T	D	A	D	I	A	Q	V	Q	V	Q	N	K	L	Q	L	A	M	P	L
Template Known Secondary structure														T	T								T	T	T												S	S										T	T	T										T	T											T	T	S	G	G	G	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	S	G	M	P	S	R	P	T	Y	R	K	A	N	P	S	D
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		L	P	Q	E	V	.	Q	Q	Q	G	V	S	V	E	K	S	S	S
Template Known Secondary structure		S					.		T	S
Template Predicted Secondary structure							.
Template SS confidence
		118	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions