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Job DescriptionP76399
Confidence100.00%DateThu Jan 5 12:22:40 GMT 2012
Rank3Aligned Residues677
% Identity17%Templatec3aqpB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  LGSTRIILQFDFDRDINGAARDVQAAINAAQSLLPSGMPSRPTYRKANPSDAPIMILTLTSDTYSQGELYDFASTQLAPT
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Template Sequence  KGGLRIVLEADVENPTLDDLEKARTVLENRIN. . ALGV. AEPLIQIQGQKRIVVELPGLSQA. . DQDRALKLIGQRAVLE
Template Known Secondary structure  T


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   40.........50.........60.........70. .... ....80.........90........ .100.........110....
 
   166... 170.........180.........190.........200.........210.........220.........230.........240...
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Query Sequence  ISQI. . DGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAVSNANVRKPQGALEDGTHRWQIQTNDELKTAAEYQP
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Template Sequence  FRIVKEGATGTTVAQINQALRENPRLNREELEKDLIKPEDLGPPLLTGADLADARAVFDQFGRPQVSLTFTPEGAKKFEE
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TT
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   115....120.........130.........140.........150.........160.........170.........180.........190....
 
   244.....250.........260.........270.........280.........290.........300.........310.........320...
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Query Sequence  LIIHYNNGGAVRLGDVATVTDSVQDVRNAGMTNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDR
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Template Conservation   
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Template Sequence  VTRQNIGK. . . RLAIVLDGRVYTAPVIRQAITGGQAVI. . . . . . . EGLSSVEEASEIALVLR. . SGSLPVPLKVAEIRAI
Template Known Secondary structure  TTTS...


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   195....200.. .......210.........220......... 230.........240...... ...250.........260..
 
   324... ..330.........340.........350.........360.........370.........380.........390.........400..
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Query Sequence  SPTI. RASLEEVEQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDD
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Template Sequence  GPTLGQDAIQAGIRSALIGTLAIFLLIFAYYG. PHLGLVASLGLLYTSALILGLLSGLGATLTLPGIAGLVLTLGAAVDG
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   263......270.........280.........290.... .....300.........310.........320.........330.........340.
 
   403......410.........420.........430.........440.........450.........460.........470.........480..
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Query Sequence  AIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLLREFAVTLSVAIGISLLVSLTLT
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Template Conservation   
            
     
           
  
  

      
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Template Sequence  NVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGP. . . VRGFAVILAIGVVASVFSNLVFS
Template Known Secondary structure  TT

T

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   342.......350.........360.........370.........380.........390..... ....400.........410........
 
   483......490.........500.........510.........520.........530.........540.........550.........560..
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Query Sequence  PMMCGWMLKASKPREQKRLRGFGRMLVALQQGYGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMG
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Template Sequence  RHLLERLADRGEIRPPMWLVDPRFN. . . . . . . . . . . . . . FMGPARYVTAATLLLAALAAGVVFAKGFNYSIDFTGG. TAY
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   419420.........430.........440... ......450.........460.........470.........480 ...
 
   563......570.........580.........590.........600.........610.........620.........630.........640..
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Query Sequence  GIQADQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFTGGSRVNSGMMFITLKPRDERSETAQQIIDRLRVKLAKEPGANL
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Template Sequence  TLRAEPNVEVETLRRFLEE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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TT

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   484.....490.........500..
 
   643......650.........660.........670.........680.........690.........700.........710.........720..
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Query Sequence  FLMAVQDIRVGGRQSNASYQYTLLSDDLAALREWEPKIRKKLATLPELADVNSDQQDNGAEMNLVYDRDTMARLGIDVQA
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Template Sequence  . . KGFPGKEAVITQVYREFLVKLPPLSDERRLELERLFASEL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ..TTS
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   503......510.........520.........530.........540..
 
   723......730.........740.........750.........760.........770.........780.........790.........800..
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Query Sequence  ANSLLNNAFGQRQISTIYQPMNQYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGLSAAS
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   803......810.........820.........830.........840.........850.........860.........870.........880..
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Query Sequence  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIATVYIVLGILYESYVHPLTILS
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . KATVLASETVGPAIGEELRRNAVMAVLVGLGLILLYVAFRF. DWTFGVASIL
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   549550.........560.........570.........580......... 590.........
 
   883......890.........900.........910.........920.........930...... ...940.........950.........960.
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Query Sequence  TLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRHGN. LTPQEAIFQACLLRFRPIMMTTLAA
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Template Sequence  AVAHDVAIVAGMYSLLGLEFSIPTIAALLTIVGYSINDSIVVSDRIRENQKLLRHLPYAELVNRSINQTLSRTVMTSLTT
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   600.........610.........620.........630.........640.........650.........660.........670.........
 
   962.......970.........980.........990.........1000.........1010.
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Query Sequence  LFGALPLVLSGGDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRL
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Template Sequence  LLPILALLFL. . . GGSVLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNR
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   680......... 690.........700.........710.........720......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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