Job Description P08956 Confidence 100.00% Date Thu Jan 5 11:01:43 GMT 2012 Rank 19 Aligned Residues 409 % Identity 16% Template c3mwyW_ PDB info PDB header:hydrolase Chain: W: PDB Molecule:chromo domain-containing protein 1; PDBTitle: crystal structure of the chromodomain-atpase portion of the yeast chd12 chromatin remodeler Resolution 3.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.		.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		A	D	N	P	G	M	S	E	L	G	L	R	Y	Y	Q	E	D	A	V	R	A	V	E	K	A	I	V	K	G	Q	Q	E	I	L	L	A	M	A	T	G	T	G	K	T	R	T	A	I	A	M	M	F	R	L	I	Q	S	Q	R	F	K	R	.	I	L	F	L	V	D	R	R	S	L	G	E	Q	A	L	G	A
Query Conservation																																																																.
Alig confidence																															.																																	.								.
Template Conservation																															.																																									.
Template Sequence		V	Q	P	P	F	I	K	G	G	E	L	R	D	F	Q	L	T	G	I	N	W	M	A	F	L	W	S	K	G	.	D	N	G	I	L	A	D	E	M	G	L	G	K	T	V	Q	T	V	A	F	I	S	W	L	I	F	A	R	R	Q	N	G	P	H	I	I	V	V	P	L	.	S	T	M	P	A	W	L	D	T
Template Known Secondary structure		S			T	T			S	S				T														T	T	T	.									T	T	S	S	T	T															S			S								T	.	T	T
Template Predicted Secondary structure																															.																																									.
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.		.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.		.	.	.	.	.	440	.	.	.
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.									.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.
Query Sequence		F	E	D	T	R	I	N	G	D	T	F	N	S	I	F	D	I	K	G	L	.	.	.	.	.	.	.	.	T	D	K	F	P	E	D	S	T	K	I	H	V	A	T	V	Q	S	L	V	K	R	T	L	Q	S	D	E	P	M	P	V	A	R	Y	D	C	I	V	V	D	E	A	H	R	G	Y	I	L	D	K	E
Query Conservation																						.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.																														.	.	.	.
Template Conservation																																																											.	.	.	.
Template Sequence		F	E	K	W	A	P	D	L	N	C	I	C	Y	M	G	N	Q	K	S	R	D	T	I	R	E	Y	E	F	Y	T	N	P	K	T	M	K	F	N	V	L	L	T	T	Y	E	Y	I	L	K	D	R	A	E	L	G	S	I	.	.	.	.	K	W	Q	F	M	A	V	D	E	A	H	R	L	K	N	A	E	S	S
Template Known Secondary structure						S	T	T									S	S											S		S								S						T	T					T						T	S	.	.	.	.								T	T	G	G	G	G			S	S	S
Template Predicted Secondary structure																																																											.	.	.	.
Template SS confidence
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500					.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
		586	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.										630	.	.	.	.	.	.	.	.	.	640	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	T	E	G	E	L	Q	F	R	S	Q	L	D	Y	V	S	A	Y	R	R	I	L	D	H	F	D	A	V	K	I	A	L	T	A	T	P	A	L	H	T	V	Q	I	F	.	.	.	.	.	.	.	.	.	G	E	P	V	Y	R	Y	T	Y	R	T	A	V	I	D	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																														.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	E	S	L	N	S	F	K	V	A	N	R	M	L	I	T	G	T	P	L	Q	N	N	I	K	E	L	A	A	L	V	N	F	L	M	P	G	R	F	N	Q	D	E	E	Q	E	E	Y	I	H	D	L	H	R	R	I	Q	P	F	I	L	R	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	S										S				S	S		S												S						T	T												T	T	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.
							645	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.																		.	.	.	.	.	.	.	700	.	.
Predicted Secondary structure		.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	G	F	L	I	D	Q	D	P	P	I	Q	I	I	T	R	N	A	Q	E	G	V	Y	L	S	K	G	E	Q	V	E	R	I	S	P	Q	G	E	V	I	N	D	T	L	E	D	D	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	V	A	D	F	N	R	G	L
Query Conservation		.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	K	D	V	E	K	S	L	P	S	K	T	E	R	I	L	R	V	E	L	S	D	V	Q	T	E	Y	Y	K	N	I	L	T	K	N	Y	S	F	S	L	L	N	I	M	N	E	L	K	K	A	S	N	H	P	Y	L	F	D	N	A	E	E	R	V	L	Q	K	F	M	T	R	E	N	V	L	R	G	L	I
Template Known Secondary structure			G	G	G	G	T	T	T	S																															T															G	G	G	S	S	S												S
Template Predicted Secondary structure
Template SS confidence
		598	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
		703	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	P	A	F	N	R	A	V	C	N	E	L	T	N	Y	L	D	P	T	G	S	Q	K	T	L	V	F	C	V	T	N	A	H	A	D	M	V	V	E	E	L	R	A	A	F	K	K	K	Y	P	Q	L	E	H	D	A	I	I	K	I	T	G	D	A	D	K	D	A	R	K	V	Q	T	M	I	T	R	F	N
Query Conservation
Alig confidence																				.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	S	S	G	K	M	V	L	L	D	Q	L	L	T	R	L	K	K	.	.	D	G	H	R	V	L	I	F	S	Q	M	V	R	M	L	D	I	L	G	D	Y	L	S	I	K	.	.	.	.	.	.	.	.	.	.	.	G	I	N	F	Q	R	L	D	G	T	V	P	S	A	Q	R	R	I	S	I	D	H	F	N
Template Known Secondary structure			T															T	T	.	.	T	T								S																.	.	.	.	.	.	.	.	.	.	.	T							S	T	T	S											T	T	S
Template Predicted Secondary structure																				.	.																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		692	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.			710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.												.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.
		783	.	.	.	.	.			.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		K	E	R	L	P	N	.	.	I	V	V	T	V	D	L	L	T	T	G	V	D	I	P	S	I	C	N	I	V	F	L	R	K	V	R	S	R	I	L	Y	E	Q	M	K	G	R	A	T	R	L	C	P	E	V	N	K	T	S	F	K	I	F	D	C	V	D	I	Y	S	T	L	E	S	V	D	T	M	R	P	V
Query Conservation								.	.
Alig confidence								.	.
Template Conservation
Template Sequence		S	P	D	S	N	D	F	V	F	L	L	S	T	R	A	G	G	L	G	I	N	L	M	T	A	D	T	V	V	I	F	D	S	D	W	N	P	Q	A	D	L	Q	A	M	A	R	A	H	R	I	G	Q	K	N	H	V	M	V	Y	R	L	V	S	K	D	T	V	E	E	E	V	L	E	R	A	R	K	K	M	I
Template Known Secondary structure		S	T	T		S												T	T	T				T	T							S	S			S		S								T	T	T	S		S	S			S										T	T	S													T	T
Template Predicted Secondary structure
Template SS confidence
		759	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.
		861	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	R	P	K	V	E	L	Q	T	L	V	N	E	I	T	D	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	Y	N	E	P	N	A	G	E	L	S	A	I	L	K	F	G
Template Known Secondary structure		S															S	S
Template Predicted Secondary structure
Template SS confidence
		839	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.