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Job DescriptionP08956
Confidence99.21%DateThu Jan 5 11:01:43 GMT 2012
Rank119Aligned Residues348
% Identity20%Templatec3juxA_
PDB info PDB header:protein transportChain: A: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the translocation atpase seca from thermotoga2 maritima
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   442.......450.........460.........470.........480.........490.........500.........510.........520.
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Query Sequence  ELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING
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Template Sequence  GMRPFDVQVMGGIAL. . . . . . . HEGKVAEMKTGEGKTLAATMPIYLNALIG. . KGVHLVTVNDYLARRDALWMGPVYLFL
Template Known Secondary structure  S



.......TT


TTS
TTTS..S
SST
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   73......80....... ..90.........100.........110...... ...120.........130.........140...
 
   522.......530. ........540.........550
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Query Sequence  DTFNSIFDIK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GLTDKFPEDSTKIHVATVQ
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Template Sequence  GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNN
Template Known Secondary structure  T

TTTSSTT

SS
TT

SSS

GGGS
TTT


B

SS
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   144.....150.........160.........170.........180.........190.........200.........210.........220...
 
   551........560 .........570.........580.........590.........600.........610.........620.....
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Query Sequence  SLVKRTLQSD. . . . . EPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHT
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Template Sequence  EFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEAR. . . . . . . . . . . . . . . . . . . . . . . . . TPLIISGPSKESPSV
Template Known Secondary structure  TS
SSTTS






TTTGGG.........................S




S
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   224.....230.........240.........250.........260... ......270........
 
   626...630....... ..640.........650.......
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Query Sequence  VQIFGEPVYRYT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YRTAVIDGFLIDQDPPIQII. . . .
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Template Sequence  YRRFAQIAKKFVKDKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEV
Template Known Secondary structure  TTSS
BTTT

SSS

T
S
TTSGGGSTTTSSTT
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   279280.........290.........300.........310.........320.........330.........340.........350........
 
   658.660.........670.........680.........690.........700..
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Query Sequence  . . . . . . TRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  IIVDEFTGRLLPGRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIP
Template Known Secondary structure 
SSSS
S


S


GGGSS







TTSSSS
GGGS




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   359360.........370.........380.........390.........400.........410.........420.........430........
 
   703......710.........720.........730.........740.........750.........760......
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Query Sequence  . . . . . . . . . . . . . . . . VIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGD
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Template Sequence  THKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQP. . VLVGTTSIEKSELLSSMLK. . . . . . . . . . . KKGIPHQVLN
Template Known Secondary structure 
SS






SST

..SS...........TTT



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   439440.........450.........460.........470...... ...480.........490..... ....500.....
 
   767..770.........780.........790.........800... ......810.........820.........830.......
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Query Sequence  ADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIP. . . . . . . . . SICNIVFLRKVRSRILYEQMKGRATRLCPEVNKT
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Template Sequence  AKYHEKEAEIVAKAGQKG. . . MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRID. NQLRGRAGRQGDP. GES
Template Known Secondary structure  S
STT...
TTTTTT





TTTTTTTS
SS

SS.TTSS
SS

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   506...510.........520... ......530.........540.........550.........560.... .....570....... ..580
 
   838.840.
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Query Sequence  SFKI
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Template Sequence  IFFL
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   581...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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