Job Description P08956 Confidence 99.53% Date Thu Jan 5 11:01:43 GMT 2012 Rank 92 Aligned Residues 162 % Identity 20% Template c3iuyB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx53; PDBTitle: crystal structure of ddx53 dead-box domain Resolution 2.40 Å

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		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	D	N	P	G	M	S	E	L	G	L	R	Y	Y	Q	E	D	A	V	R	A	V	E	K	A	I	V	K	G	Q	Q	E	I	L	L	A	M	A	T	G	T	G	K	T	R	T	A	I	A	M	M	F	R	L	I	Q	S	Q	R	F	K	R	I	L	F	L	V	D	R	R	S	L	G	E	Q	A	L	G	A
Query Conservation
Alig confidence																												.	.	.	.	.																														.
Template Conservation																												.	.	.	.	.																														.
Template Sequence		L	K	S	I	I	R	V	G	I	L	K	P	T	P	I	Q	S	Q	A	W	P	I	I	L	Q	G	.	.	.	.	.	I	D	L	I	V	V	A	Q	T	G	T	G	K	T	L	S	Y	L	M	P	G	F	I	H	L	D	S	N	G	.	P	G	M	L	V	L	T	P	T	R	E	L	A	L	H	V	E	A	E
Template Known Secondary structure									T			S														T	T	.	.	.	.	.									T	T	S															T				.		S						S	S
Template Predicted Secondary structure																												.	.	.	.	.																														.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.						.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	D	T	R	I	N	G	D	T	F	N	S	I	F	D	I	K	G	L	T	D	K	F	P	E	D	S	T	K	I	H	V	A	T	V	Q	S	L	V	K	R	T	L	Q	S	D	E	P	M	P	V	A	R	Y	D	C	I	V	V	D	E	A	H	R	G	Y	I	L	D	K	E	Q	T	E	G	E	L	Q	F
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Sequence		C	S	K	Y	S	Y	K	G	L	K	S	I	C	I	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	V	D	I	I	I	A	T	P	G	R	L	N	D	L	Q	M	N	N	S	.	.	V	N	L	R	S	I	T	Y	L	V	I	D	E	A	D	K	M	L	D	M	E	F	E	P	Q	I	R	K	I	L	L
Template Known Secondary structure								T	T									.	.	.	.	.	.	.	.	.	.	.	.		S															T	T		.	.	S			T	T															T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340													.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.			360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		594	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	Q	L	D	Y	V	S	A	Y	R	R	I	L	D	H	F	D	A	V	K	I	A	L	T	A	T	P	A	L	H	T	V	Q	I
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	D	R	Q	T	V	M	T	S	A	T	W	P	D	T	V	R	Q	L
Template Known Secondary structure			S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	S								S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		405	.	.	.														.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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