Phyre 2 alignment of P08956 with c3i5yA

Job Description P08956
Confidence 99.97% Date Thu Jan 5 11:01:43 GMT 2012

Rank 25 Aligned Residues 352

% Identity 16% Template c3i5yA_

PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase mss116; PDBTitle: structure of mss116p bound to ssrna containing a single 5-bru and amp-2 pnp

Resolution 2.49 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.						.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.
Query Sequence	F	A	D	N	P	G	M	S	E	L	G	L	R	Y	Y	Q	E	D	A	V	R	A	V	E	K	A	I	V	K	G	Q	Q	E	I	L	L	A	M	A	T	G	T	G	K	T	R	T	A	I	A	M	M	F	R	L	I	Q	S	Q	R	F	K	.	.	.	.	.	R	I	L	F	L	V	D	R	R	S	L	G	E
Query Conservation																																																															.	.	.	.	.
Alig confidence																								.	.	.																																					.	.	.	.	.
Template Conservation																								.	.	.
Template Sequence	H	K	A	I	T	R	M	E	F	P	G	L	T	P	V	Q	Q	K	T	I	K	P	I	.	.	.	L	S	S	E	D	H	D	V	I	A	R	A	K	T	G	T	G	K	T	F	A	F	L	I	P	I	F	Q	H	L	I	N	T	K	F	D	S	Q	Y	M	V	K	A	V	I	V	A	P	T	R	D	L	A	L
Template Known Secondary structure						T	T			S	S													.	.	.			S	S										T	T	S																	T	T	T	S	S	T	T	S								S	S
Template Predicted Secondary structure																								.	.	.
Template SS confidence
	118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140				.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.

	509	510	.	.	.	.	.	.									.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
Predicted Secondary structure									.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.
Query Sequence	Q	A	L	G	A	F	E	D	.	.	.	.	.	.	.	.	T	R	I	N	G	D	T	F	N	S	I	F	D	I	K	G	L	T	D	K	F	P	E	D	S	T	K	I	H	V	A	T	V	Q	S	L	V	K	R	T	L	Q	S	D	E	P	M	P	V	A	R	Y	D	C	I	V	V	D	E	A	H	R	G	Y
Query Conservation									.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.																																														.
Template Conservation																																																														.
Template Sequence	Q	I	E	A	E	V	K	K	I	H	D	M	N	Y	G	L	K	K	Y	A	C	V	S	L	V	G	G	T	D	F	R	A	A	M	N	K	M	N	K	L	R	P	N	I	V	I	A	T	P	G	R	L	I	D	V	L	E	K	Y	S	N	.	K	F	F	R	F	V	D	Y	K	V	L	D	E	A	D	R	L	L
Template Known Secondary structure												T		G	G	G	G	G	S							T	T	S															S																			.				T	T								T					T
Template Predicted Secondary structure																																																														.
Template SS confidence
	195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

	581	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660
Predicted Secondary structure
Query SS confidence
Query Sequence	I	L	D	K	E	Q	T	E	G	E	L	Q	F	R	S	Q	L	D	Y	V	S	A	Y	R	R	I	L	D	H	F	D	A	V	K	I	A	L	T	A	T	P	A	L	H	T	V	Q	I	F	G	E	P	V	Y	R	Y	T	Y	R	T	A	V	I	D	G	F	L	I	D	Q	D	P	P	I	Q	I	I	T	R	N
Query Conservation
Alig confidence																.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	I	G	F	R	D	D	L	E	T	I	S	G	I	L	.	.	.	.	.	.	N	E	K	N	S	K	S	A	D	N	I	K	T	L	L	F	S	A	T	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	V	Q	K	L	A	N	N	I	M	N	K	K	E	C	L	F	L	D	T	V	D	K
Template Known Secondary structure	S	T	T	T												.	.	.	.	.	.					S	S		T	T									S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	T						T	G	G	G			S	S							S	S		S
Template Predicted Secondary structure																.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	274	.	.	.	.	.	280	.	.	.	.	.	.	.	.							.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.															310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

	661	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740
Predicted Secondary structure
Query SS confidence
Query Sequence	A	Q	E	G	V	Y	L	S	K	G	E	Q	V	E	R	I	S	P	Q	G	E	V	I	N	D	T	L	E	D	D	Q	D	F	E	V	A	D	F	N	R	G	L	V	I	P	A	F	N	R	A	V	C	N	E	L	T	N	Y	L	D	P	T	G	S	Q	K	T	L	V	F	C	V	T	N	A	H	A	D	M	V
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	N	E	P	E	A	H	E	R	I	D	Q	S	V	V	I	S	E	K	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	S	I	F	A	A	V	E	H	I	K	K	Q	I	K	E	R	D	S	N	Y	K	A	I	I	F	A	P	T	V	K	F	T	S	F	L
Template Known Secondary structure	S	S		S	S		T	T									S	S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T	T	T									S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.																									.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

	741	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820
Predicted Secondary structure
Query SS confidence
Query Sequence	V	E	E	L	R	A	A	F	K	K	K	Y	P	Q	L	E	H	D	A	I	I	K	I	T	G	D	A	D	K	D	A	R	K	V	Q	T	M	I	T	R	F	N	K	E	R	L	P	N	I	V	V	T	V	D	L	L	T	T	G	V	D	I	P	S	I	C	N	I	V	F	L	R	K	V	R	S	R	I	L	Y
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.																															.
Template Conservation								.	.	.	.	.	.	.	.																															.
Template Sequence	C	S	I	L	K	N	E	.	.	.	.	.	.	.	.	F	K	K	D	L	P	I	L	E	F	H	G	K	I	T	Q	N	K	R	T	S	L	V	K	R	F	K	K	D	E	.	S	G	I	L	V	C	T	D	V	G	A	R	G	M	D	F	P	N	V	H	E	V	L	Q	I	G	V	P	S	E	L	A	N	Y
Template Known Secondary structure								.	.	.	.	.	.	.	.		T	T	T	S						S	T	T	S																S	.	S							G	G	G	T	S	S				T	T								S			S	S	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.																															.
Template SS confidence
	390	.	.	.	.	.	.									.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.		.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460

	821	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	Q	M	K	G	R	A	T	R	L	C	P	E	V	N	K	T	S	F	K	I	F	D
Query Conservation
Alig confidence														.
Template Conservation														.
Template Sequence	I	H	R	I	G	R	T	A	R	S	G	K	E	.	G	S	S	V	L	F	I	C	K
Template Known Secondary structure					T	T	S	S		T	T			.									G
Template Predicted Secondary structure														.
Template SS confidence
	461	.	.	.	.	.	.	.	.	470	.	.	.		.	.	.	.	.	.	480	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions