Job Description P08956 Confidence 99.94% Date Thu Jan 5 11:01:43 GMT 2012 Rank 44 Aligned Residues 340 % Identity 16% Template c3fhtA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: crystal structure of human dbp5 in complex with amppnp and rna Resolution 2.20 Å

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		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		F	A	D	N	P	G	M	S	E	L	G	L	R	Y	Y	Q	E	D	A	V	R	A	V	E	K	A	I	V	K	G	Q	Q	E	I	L	L	A	M	A	T	G	T	G	K	T	R	T	.	A	I	A	M	M	F	R	L	I	Q	S	Q	R	F	K	R	I	L	F	L	V	D	R	R	S	L	G	E	Q	A	L	G
Query Conservation																																																	.
Alig confidence																									.	.	.																						.
Template Conservation																									.	.	.
Template Sequence		L	Q	G	V	Y	A	M	G	F	N	R	P	S	K	I	Q	E	N	A	L	P	L	M	.	.	.	L	A	E	P	P	Q	N	L	I	A	Q	S	Q	S	G	T	G	K	T	A	A	F	V	L	A	M	L	S	Q	V	E	P	A	N	K	Y	P	Q	C	L	C	L	S	P	T	Y	E	L	A	L	Q	T	G	K
Template Known Secondary structure								T	T			S													.	.	.		S	S	S										T	T	S																T	T	S		S								S	S
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	E	D	T	R	I	N	G	D	T	F	N	S	I	F	D	I	K	G	L	T	D	K	F	P	E	D	S	T	K	I	H	V	A	T	V	Q	S	L	V	K	R	T	L	Q	S	D	E	P	M	P	V	A	R	Y	D	C	I	V	V	D	E	A	H	R	G	Y	I	L	D	K	E	Q	T	E	G	E	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	E	Q	M	G	K	F	Y	P	E	L	K	L	A	Y	A	V	R	G	N	K	L	E	R	G	Q	K	I	S	E	Q	I	V	I	G	T	P	G	T	V	L	D	W	C	S	K	L	K	F	I	D	P	K	K	I	K	V	F	V	L	D	E	A	D	V	M	I	A	T	Q	G	H	Q	D	Q	S	I	R	I
Template Known Secondary structure							T	T	T	S	T	T								T	T					T	T						S														T	T	S		S	S		G	G	G								T						S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		593	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	S	Q	L	D	Y	V	S	A	Y	R	R	I	L	D	H	F	D	A	V	K	I	A	L	T	A	T	P	A	L	H	T	V	Q	I	F	G	E	P	V	Y	R	Y	T	Y	R	T	A	V	I	D	G	F	L	I	D	Q	D	P	P	I	Q	I	I	T	R	N	A	Q	E	G	V	Y	L	S	K	G	E	Q
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	R	M	L	P	R	.	.	.	.	.	.	.	.	.	.	.	.	N	C	Q	M	L	L	F	S	A	T	F	E	D	S	V	W	K	F	A	Q	K	V	V	P	D	P	N	V	I	K	L	K	R	E	E	E	T	L	D	T	I	K	Q	Y	Y	V	L	C	S	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	S		T	.	.	.	.	.	.	.	.	.	.	.	.	T								S														S	S	S								G	G	G	S	S		T	T									S	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		261	.	.	.	.	.													.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		673	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	R	I	S	P	Q	G	E	V	I	N	D	T	L	E	D	D	Q	D	F	E	V	A	D	F	N	R	G	L	V	I	P	A	F	N	R	A	V	C	N	E	L	T	N	Y	L	D	P	T	G	S	Q	K	T	L	V	F	C	V	T	N	A	H	A	D	M	V	V	E	E	L	R	A	A	F	K	K	K	Y
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	D	E	K	F	Q	A	L	C	N	L	Y	G	A	I	T	I	A	Q	A	M	I	F	C	H	T	R	K	T	A	S	W	L	A	A	E	L	S	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																S	S	S							S	S													.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template SS confidence
																																				316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		753	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.							.	820	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.
Query Sequence		P	Q	L	E	H	D	A	I	I	K	I	T	G	D	A	D	K	D	A	R	K	V	Q	T	M	I	T	R	F	N	K	E	R	L	P	N	I	V	V	T	V	D	L	L	T	T	G	V	D	I	P	S	I	C	N	I	V	F	L	R	K	V	R	S	R	I	.	.	.	.	.	.	L	Y	E	Q	M	K	G	R
Query Conservation																																																																				.	.	.	.	.	.
Alig confidence		.	.	.	.																														.																																	.	.	.	.	.	.
Template Conservation		.	.	.	.																														.
Template Sequence		.	.	.	.	K	E	G	H	Q	V	A	L	L	S	G	E	M	M	V	E	Q	R	A	A	V	I	E	R	F	R	E	G	K	.	E	K	V	L	V	T	T	N	V	C	A	R	G	I	D	V	E	Q	V	S	V	V	I	N	F	D	L	P	V	D	K	D	G	N	P	D	N	E	T	Y	L	H	R	I	G	R
Template Known Secondary structure		.	.	.	.		T	T								T	T	S														T	T	S	.		S						G	G	G	T	S	S				T	T							S	S			B		S	S	S	S	B										T	T
Template Predicted Secondary structure		.	.	.	.																														.
Template SS confidence
						355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
		827	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	R	L	C	P	E	V	N	K	T	S	F	K	I	F	D	C	V	D	I	Y	S	T	L	E
Query Conservation
Alig confidence					.	.	.	.	.
Template Conservation					.	.	.	.	.
Template Sequence		T	G	R	.	.	.	.	.	F	G	K	R	G	L	A	V	N	M	V	D	S	K	H	S	M	N
Template Known Secondary structure		S	S		.	.	.	.	.	T	T											S
Template Predicted Secondary structure					.	.	.	.	.
Template SS confidence
		430	.	.						.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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