Job Description P08956 Confidence 100.00% Date Thu Jan 5 11:01:43 GMT 2012 Rank 21 Aligned Residues 455 % Identity 18% Template c3dmqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:rna polymerase-associated protein rapa; PDBTitle: crystal structure of rapa, a swi2/snf2 protein that2 recycles rna polymerase during transcription Resolution 3.20 Å

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		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	G	L	R	Y	Y	Q	E	D	A	V	R	A	V	E	K	A	I	V	K	G	Q	Q	E	I	L	L	A	M	A	T	G	T	G	K	T	R	T	A	I	A	M	M	F	R	L	I	Q	S	Q	R	F	K	R	I	L	F	L	V	D	R	R	S	L	G	E	Q	A	L	G	A	F	E	D	T	R	I	N	G
Query Conservation
Alig confidence																	.	.	.																																														.
Template Conservation																	.	.	.																																														.
Template Sequence		R	T	S	L	I	P	H	Q	L	N	I	A	H	D	V	.	.	.	G	R	R	H	A	P	R	V	L	L	A	D	E	V	G	L	G	K	T	I	E	A	G	X	I	L	H	Q	Q	L	L	S	G	A	A	E	R	V	L	I	I	V	P	E	T	.	L	Q	H	Q	W	L	V	E	X	L	R	R	F	N	L	R
Template Known Secondary structure		S	S														.	.	.			S	S	S									T	T	S																T	S	S										T	T	.	T												S
Template Predicted Secondary structure																	.	.	.																																														.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.				.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.			540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		D	T	F	N	S	I	F	D	I	K	G	L	T	D	K	F	P	E	.	.	D	S	T	K	I	H	V	A	T	V	Q	S	L	V	K	R	T	L	Q	S	D	E	P	M	P	V	A	R	Y	D	C	I	V	V	D	E	A	H	R	G	Y	I	L	D	K	E	Q	T	E	G	E	L	Q	F	R	S	Q	L	D	Y
Query Conservation																				.	.
Alig confidence																				.	.																	.																																			.	.	.	.	.	.	.	.	.
Template Conservation																																						.																																			.	.	.	.	.	.	.	.	.
Template Sequence		F	A	L	F	D	D	E	R	Y	A	E	A	Q	H	D	A	Y	N	P	F	D	T	E	Q	L	V	I	C	S	L	D	F	A	R	R	S	.	K	Q	R	L	E	H	L	C	E	A	E	W	D	L	L	V	V	D	E	A	H	H	L	V	W	S	E	D	A	P	S	R	E	Y	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																T	T		S	S	S	T	T		S											T	S	.	T	T	T	T					T	S										S	S					B	T	T	B						.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																						.																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.																			.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	A	Y	R	R	I	L	D	H	F	D	A	V	K	I	A	L	T	A	T	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	H	T	V	Q	I	F	G	E	P	V	Y	R	Y	T	Y	R	T	A	V	I	D	G	F	L	I	D	Q	D	P	P	I	Q	I	I	T	R	N	A
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	Q	A	I	E	Q	L	A	E	H	V	P	G	V	L	L	L	T	A	T	P	E	Q	L	G	X	E	S	H	F	A	R	L	R	L	L	D	P	N	R	F	H	D	F	A	Q	F	V	E	E	Q	K	N	Y	C	P	V	A	D	A	V	A	X	L	L	A	G	N	K	L	S	N	D	E	L	N	X	L	G
Template Known Secondary structure		.	.								T	T		S	S				S		S	S		S	S	S		S	S		T									T	T	T		S	S	T																			T	T	T	T	S					G	G	G	T	T	S	S	T
Template Predicted Secondary structure		.	.
Template SS confidence
				297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		662	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	E	G	V	Y	L	S	K	G	E	Q	V	E	R	I	S	P	Q	G	E	V	I	N	D	T	L	E	D	D	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	X	I	G	E	Q	D	I	E	P	L	L	Q	A	A	N	S	D	S	E	D	A	Q	S	A	R	Q	E	L	V	S	X	L	X	D	R	H	G	T	S	R	V	L	F	R	N	T	R	N	G	V	K	G	F	P	K	R	E	L	H	T	I	K	L	P	L	P	T	Q	Y	Q	T	A	I	K	V	S	G	I	X
Template Known Secondary structure		T	T	T		T	T		S	S	T	T	G	G	G	T				S	S		S	T	T	T									G	G	G		T	T	T	T	T						T	T	T																														T
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
																			693	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	V	A	D	F	N	R	G	L	V	I	P	A	F	N	R	A	V	C	N	E	L	T	N	Y	L	D	P	T	G	S	Q	K	T	L	V	F	C	V	T	N	A	H	A	D	M	V	V	E	E	L	R	A	A	F	K	K	K	Y	P	Q	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	R	K	S	A	E	D	R	A	R	D	X	L	Y	P	E	R	I	Y	Q	E	F	E	G	D	N	A	T	W	W	N	F	D	P	R	V	E	W	L	X	G	Y	L	T	S	H	R	S	Q	K	V	L	V	I	C	A	K	A	A	T	A	L	Q	L	E	Q	V	L	R	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T			S	S	G	G	G	G	T						S	G	G	G	T	T	T	T	T	S	S	S			T	T	T	T	S													T	S	S	S							S	S	T												.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
		756	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.		.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		E	H	D	A	I	I	K	I	T	G	D	A	D	K	D	A	R	K	V	Q	T	M	I	T	R	F	N	K	E	R	L	.	P	N	I	V	V	T	V	D	L	L	T	T	G	V	D	I	P	S	I	C	N	I	V	F	L	R	K	V	R	S	R	I	L	Y	E	Q	M	K	G	R	A	T	R	L	C	P	E	V
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence		E	R	E	G	I	R	A	A	V	F	H	E	G	X	S	I	I	E	R	D	R	A	A	A	W	F	A	E	E	D	T	G	A	Q	V	L	L	C	S	E	I	G	S	E	G	R	N	F	Q	F	A	S	H	X	V	X	F	D	L	P	F	N	P	D	L	L	E	Q	R	I	G	R	L	D	R	I	G	Q	A	H
Template Known Secondary structure		T	T	T									T	T	S		T	T											S	T	T	S	S							S			T	T		S	S			T	T							S	S			S	S										T	T	S		S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
		835	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.		.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		N	K	T	S	F	K	I	F	D	C	V	D	I	Y	S	T	L	E	S	V	D	T	M	R	.	P	V	V	V	R	P	K	V	E	L	Q	T	L	V	N	E	I	T	D	S	E	T	Y	K	I	T	E	A	D	G	R	S	F	A	E	H	S	H	E	Q	L	V	A	K	L	Q	R	I	I	G	L	A	T	F	N
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		D	I	Q	I	H	V	P	Y	L	E	K	T	A	Q	S	V	L	V	R	W	Y	H	E	G	L	D	A	F	E	H	T	C	P	T	G	R	T	I	Y	D	S	V	Y	N	D	L	I	N	Y	L	A	S	P	D	Q	T	E	G	F	D	D	L	I	K	N	C	R	E	Q	H	E	A	L	K	A	Q	L	E	Q	G
Template Known Secondary structure											T	T	S												T	T			S	S	S			S	S																				S			T	T																					T	T
Template Predicted Secondary structure
Template SS confidence
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.
		914	.	.	.	.	.	920	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	R	S	E	T	I	D	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	D	R	L	L	E	I	H	S
Template Known Secondary structure				T	T					T
Template Predicted Secondary structure
Template SS confidence
		685	.	.	.	.	690	.	.	.